Methylocystis heyeri: H2LOC_004205
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Entry
H2LOC_004205 CDS
T06290
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mhey
Methylocystis heyeri
Pathway
mhey03030
DNA replication
mhey03430
Mismatch repair
mhey03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H2LOC_004205 (dnaE)
03430 Mismatch repair
H2LOC_004205 (dnaE)
03440 Homologous recombination
H2LOC_004205 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhey03032
]
H2LOC_004205 (dnaE)
03400 DNA repair and recombination proteins [BR:
mhey03400
]
H2LOC_004205 (dnaE)
Enzymes [BR:
mhey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H2LOC_004205 (dnaE)
DNA replication proteins [BR:
mhey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H2LOC_004205 (dnaE)
DNA repair and recombination proteins [BR:
mhey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H2LOC_004205 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
QGM44952
UniProt:
A0A6B8KBL5
LinkDB
All DBs
Position
941566..945027
Genome browser
AA seq
1153 aa
AA seq
DB search
MLNADPGFVHLHVHTAFSLREGALTIGQLIKLAEHDAQPALSVADTNNLFAALEFSDKAY
KAGIQSIPAAQLTVDFADGRSQLREAGLGHIVLLAQTEAGYKNLMKLCSRAYLGAEPGDA
PSVSIADLAESSGDLIVLTGGAEGALDRLLAKSQGDIAAQRLEVLEKLFPDRLYVEIQRH
NTAAEREVEAQLLDFAYRRGLPLVASNEPFFATAGDFEAHDALLCIAEGTVTSVAERRRL
TPAHYFKTRAEMLELFADLPEATQNSVEIARRCSFRPRARGPIMPRFIREAPEGVDLSLD
EIEARELRRQAEEGLEARLATTGPAPGLTRDDYVKRLEVELGVIEKMRFPGYFLIVSDFI
KHAKSKDIPVGPGRGSGAGSLVAYALTITDLDPLRFSLFFERFLNPERNSMPDFDVDFCQ
SRRGEVIEYVRSRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVPQNPA
KPVTLAEALASEQKLREAADEDERVARLFKVAGSLEGLYSNASTHAAGIVIADQPLHEVM
PLYRDPKSEMPVTQFNMKWVEPGGLVKFDFLGLKTLTVLSTASALVRRRDPGFDLARVPL
DDAETYQMLGRGETVGVFQLESAGMRKALVEMHADRFEDIIALVALYRPGPMANIPTYCA
VKLGDEEPDYLHPLIEPVLKETFGVIIYQEQVMQIAQILSGYSLGEADNLRRAMGKKIKA
EMDAQRDRFVIGAVERGLAKEKANEIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKAHY
ATEFIAASMTFDMSNTDKLAEFRQEAQRLGINVEPPSVSRSGADFDVAPGPDGKLAIRYA
LAAIKGVGDGQAASIVAARGDRPFSSLADFACRINPREVNKKVLENLACCGAFDQLDPNR
AKVFAGIETILASANRHADERSLGQNALFGADDKEELALPKAAPWTAAELLRREFEAAGF
FLSGHPLDAYRSVMGRMRLQRWSEFSASVKRGASAGRLAAVVLDRAERRTKSGSKMGIVQ
LSDESGQYEAILFQEGLTQYRDLLEKGAAVLLTLSANVEGDDVRARIVAAEPLAAAAARE
QKGLRIFLRDAEPLDRIKSGLSSGRGAGEVMLVVMREAAGEEIEIKLPGGYPVNAEIAGA
LKTIPGVVAVEHI
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacgcggatcccggtttcgtccatcttcatgttcatacggcgttttcgctgcgc
gaaggcgccctgaccattggtcagctgatcaagctcgccgagcatgacgctcagccggcc
ctgagcgtcgccgacaccaataatctgttcgccgcgctcgaattttccgacaaggcctac
aaggccgggattcagagcatcccggcggcccagctcacggtcgatttcgcggacggccga
agccagcttcgcgaagcgggcctcggccatatcgtcctgctcgcccagaccgaggcgggt
tacaagaacttgatgaagctgtgctcgcgcgcctatctcggcgccgagccgggcgatgcg
cccagcgtttccattgcagacctcgccgagtctagcggcgacctcatcgtcctgaccggc
ggcgcggaaggggccctggacaggctgctcgcgaaatcccagggcgatatcgccgcgcag
cggctggaagttctggagaagctctttcctgaccgcctttatgtcgagatccagcgccac
aacaccgccgccgagcgggaggtcgaggcgcagctgctggacttcgcctatcggcgggga
cttcctctggtggcgagcaacgagccgttcttcgccacggcgggagacttcgaggcccat
gacgcgctcctgtgcatagcagaaggaacggtcacgagcgtcgcagagcggcgccggttg
actccggcgcattatttcaagacccgcgccgagatgctggagctgttcgccgatcttccc
gaggcgacgcagaacagcgtcgagatcgcccgccgctgctcgttccggccccgcgcgcgg
ggaccgatcatgccgcgtttcattcgcgaggcccccgagggcgtcgacctgtctctggac
gagatcgaggcgcgcgagctgcgccgccaggcggaggaggggctggaggcgcgtcttgcg
acgaccggcccggcgcctggcctcacccgcgacgactacgtcaagcgcctcgaggtggag
ctcggcgtcatcgagaagatgcgctttccgggctacttcctgatcgtctcggacttcatc
aaacacgcgaagtcgaaggacattccggtggggccggggcgcggatccggcgcaggatcc
cttgtggcctatgcacttacgatcaccgatctcgaccccttgcggttcagtctcttcttc
gagcgctttctcaaccccgagcgcaactcgatgcccgacttcgacgtcgatttctgccag
agccggcggggcgaggtcatcgaatatgtgaggagccgctatggggccgatcgggtggcc
cagatcatcaccttcggttcctttctggcgcggggcgtgctgcgaagcgtcggccgcgtg
ctggaaatgccgctggggcaggtggacaagctcgccaagctggtgccgcagaatccggcc
aagccggtgaccctcgcggaggccctggccagcgagcagaagcttcgcgaagcggccgac
gaggacgagcgcgtggcgcgtcttttcaaggtcgccgggtcgctggaagggctctattcg
aacgcctccacccatgccgccggcatcgtgatcgcagatcaaccattacatgaggtaatg
ccgctatatcgcgatcccaaatcagaaatgccggtaacccagttcaacatgaagtgggtc
gaacccggcggtttggtgaagttcgacttccttggattgaagaccctcacggtgctttcg
acggcctccgctctggtgcgccggcgcgaccccggcttcgatctcgcgcgcgtgccgctg
gacgacgccgagacctatcagatgctgggtcgcggcgagactgtgggcgtgttccagctc
gaaagcgcgggcatgcgcaaggcgctggtggagatgcacgccgaccgtttcgaggacatc
atcgctctggtggcgctctaccgtcccggccctatggcgaacatcccgacctattgcgcg
gtcaaactcggcgacgaggagcccgactatctccaccccctgatcgagccggtcctgaag
gagaccttcggggtcatcatctatcaggagcaggtcatgcagatcgcgcagatcctgtcc
ggctactcgctcggcgaggccgacaatctgcgccgcgccatgggcaagaagatcaaggcc
gagatggacgcccagcgcgaccgcttcgtgatcggcgccgtggagcgggggctggcgaag
gaaaaagccaacgagattttcgatcttctggccaaattcgcagactacggcttcaacaag
agccacgccgcggcctatgcgctgatcgcctatcagaccgcctggttcaaggcccattat
gcaaccgagttcatcgccgcttcgatgaccttcgatatgagcaacaccgacaagctggcc
gaattccgccaggaggcgcagcggctggggatcaatgtggagccgccgtcggtttcgcgg
tcgggagcggatttcgacgtggcgccgggcccggacggcaagctcgcgatccgatacgcc
ctcgcggccatcaagggggtcggcgacgggcaggcggcttcgatcgtcgccgcgcggggc
gaccggcccttttcctccctcgcggatttcgcatgccggataaacccgcgcgaggtgaac
aagaaggttctggaaaatctcgcctgctgcggcgccttcgaccagctcgatccgaaccgg
gccaaggtcttcgccggcatagagaccatcctcgccagcgccaaccggcacgccgacgag
cgctcgctgggccagaacgcgctgttcggcgccgacgacaaggaagaactcgcgcttcca
aaagccgcgccctggaccgccgccgagctgctgcggcgggaattcgaggcggccgggttc
ttcctttccggccacccgctcgacgcctatcgcagcgtcatggggcggatgcggctgcag
cgctggagcgaattttcggcctcggtgaagcgcggcgcgtccgcgggccgtctcgctgcg
gtggtgctggaccgcgccgaacgccgcaccaaatcgggttcgaaaatgggcattgtccag
ctctcggacgaatccgggcaatatgaagccatattgttccaggagggcctcacccaatat
cgcgacctgctggagaaaggcgccgcggtgctgctgacgctttccgccaatgtcgagggc
gacgacgttcgcgcccggatcgtggcggccgagccgctcgccgccgcggcggcgcgggag
cagaagggcctgcgcatattcctgcgcgacgcagagccgctggaccgcatcaagtccggg
ctgtcgtcgggcaggggggctggcgaggtcatgctcgtcgtgatgcgagaagccgcgggg
gaagaaatcgagatcaagctgcccggaggttatccggtcaatgcggaaatcgccggcgcg
ctgaaaacgatccccggcgtcgtcgccgtcgagcatatttga
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