Mesomycoplasma hyorhinis GDL-1: MYM_0059
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Entry
MYM_0059 CDS
T01730
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhh
Mesomycoplasma hyorhinis GDL-1
Pathway
mhh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MYM_0059 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhh03021
]
MYM_0059 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhh03400
]
MYM_0059 (rpoC)
Enzymes [BR:
mhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MYM_0059 (rpoC)
Transcription machinery [BR:
mhh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MYM_0059 (rpoC)
DNA repair and recombination proteins [BR:
mhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MYM_0059 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEX13863
LinkDB
All DBs
Position
72992..77260
Genome browser
AA seq
1422 aa
AA seq
DB search
MSTNNKTDTKVSRQYAKIYENTIEKISLALATPENILEWSRGEVTKPETINYKTFKPERG
GLFDELIFGPLIDYKCPVCGKKYKKSNENTICLATKECEELKSKILPKIARRYSTGHIAL
NSPVLHFWFFKIDHSIISKLLGLRNEETGKSVSKASLESLIYYKSHIVLETGGLKSLAKN
KIIDISEAGVIYKNALQEILEKFEEDSEEYQDISAALTDLTEVATSKIGRDYGIDFYKLN
EIIEEYSDARISTGTKAIEYLLEHLDLKAEKEKVEQEIQEVQNSTSLSKKDSTKNQKRDK
LYKRLQVINAFLNSGQDPKSMIIKNLPVIPADLRPLVQLDGARHSTSDVNELYRRIIIRN
NRLKRWYETDAPILIIQNELRMIQEAIDALIDNQRKSPNPVTTKDNRPLKSISDALTGKK
GRFRQNLLGKRVDYSGRSVIVVGPKLKMHQAGLPRKMVAKLFEPWIIRRLIEQNSAPSPS
IKTARKMIEEENPQIWPHVAEVIKNKPILLNRAPTLHRLSIRAFEPVLVRGKAIQLHPLV
TTGFNADFDGDQMAVHVPISPEAIRETKELMFANKNILGPKDGEPIVNPSQDMILGLYYL
SQEKDDAKGQGRYFGSYNEMMKAYEVKVLDLHARIALPFSEIKIKKSNALQENKYIISTV
GKFILNRIFPDNFPFIFDNKVDDLELNYDNQLAKYLVPMGTNIPQYIQQLPLNAALTKKD
IAKIVRQIFDTYDYVVSKEDVASVINKLDFENYHDSLLLYKKLLDFKGEPLSITHAMKLA
EFTTAEFELLTRINNIHSVNKIRVFEVKDKVEILEKVWFNYVNVVAAILDDIKDLGFVYS
TNSGVSMSISDIKIAPKKQEYLKEGEDYINQLNHFYAQGWITDDERYILSINKWTAVKNE
IQKNLNETVELDPKNSLVIMMKSGAKSNMSNFVQLAGMRGLMANNVKALKVDAENERVVR
SIVEVPVKSSFLEGLTSFEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQNIVVTQN
DCFSDFGFVVKQIIDTKTNTTIVPLAERIEGRFLNKDVVSPDGEVLAQTGDFINAHLAKK
IVDSGVTAVEIRSILSCHTKNGVCKKCYGKDLATNRLVAIGEAVGIIAAQSIGEPGTQLT
MRTFHTGGVAGVEDITGGFTRLIELIDAHEHPWGRPAQISPVHGVVAKIESVKNKEDGQL
TGSTLITIEYKNEENLDAYKIIRVASNQKLRVQIGDKVVPGQKLVEGPIILKELLNYADA
RTLQNYLLKEIQRIYRMQGITISDKYIEIIIRQMLSKIQIIDNGDSDFFIGSIVDIFDYQ
EVSGKLIAEGKRPPFGNIIIKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQVDRLEG
LKENIIVGHKIPAGTNSNFEHKSKYDIRDPYSFFKPQINKNR
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaaataataaaactgatacaaaagtttctcgtcaatatgccaaaatttacgag
aatacaattgaaaaaatttctttagctctagctactcctgaaaacattttagaatgatca
agaggagaagtaactaaaccagaaacaattaattacaaaaccttcaaaccagaacgtggt
gggctttttgatgaattaatttttggtccactaatcgattacaaatgtcctgtttgtgga
aaaaagtacaaaaaatctaatgaaaacacaatttgtttagcaactaaagaatgtgaagag
ttaaaatcaaaaattttacccaaaattgctcgtcgttattcaacgggtcacattgcttta
aattctcctgttttacacttttgatttttcaaaattgatcactcaattatttcgaaatta
ctaggtttaagaaatgaagaaactggaaaatccgtttccaaagcttcattagagtcttta
atttactacaaatcccacatagttttagaaacaggtggtttaaaatctttagctaaaaat
aaaattattgacatttcagaagctggtgtaatttacaaaaatgcactacaagaaatctta
gaaaaatttgaagaagattcagaagaatatcaagacatttccgcagctttaacagatctt
actgaagtagctacttctaaaatcggtagagattacggaatagatttttataaactaaac
gaaattatcgaagagtactcagatgctcgaatttctacaggaactaaagcaattgagtat
cttttagaacatttagatttaaaagctgaaaaagaaaaagttgaacaagaaattcaagaa
gtgcaaaacagtactagtctttctaaaaaagattcaactaaaaaccaaaaaagagacaaa
ctttataaaagattacaagttattaatgcttttttaaattcaggtcaagatcccaaatca
atgattattaaaaatcttcctgttattccagctgatttacgtccattagtgcaattagat
ggtgctcgtcattctacttcagatgttaacgaactttatcgtcgtattatcattagaaac
aaccgtttaaaaagatgatatgaaacagatgctcccattttaattattcaaaatgaacta
agaatgattcaagaagctatcgatgctttaattgataatcaaagaaaatcaccaaatcca
gttactacaaaagataatcgtccacttaaatccatttctgatgcattaacaggtaaaaaa
ggtcgttttagacaaaatttacttggaaaacgtgttgattattcaggtagatctgttatt
gttgtaggtccaaaacttaaaatgcaccaagcaggtttaccgcggaaaatggtggctaaa
ttattcgaaccttgaattattagaagactaattgaacaaaatagtgctccttctccttct
attaaaacagcaagaaaaatgattgaagaagaaaatccacaaatttgaccacatgttgca
gaggtaattaaaaataaaccaattttactaaacagggcaccaactttacaccgtctttca
attagagcttttgaacctgttttagttcgtggtaaagctattcaattacatccacttgta
acaacaggattcaacgctgacttcgatggtgaccaaatggctgtgcacgttcctatttcg
cctgaagctattagagaaactaaagagttaatgtttgcaaataaaaacattttaggacca
aaagatggtgaaccaattgttaacccttcacaagatatgattttgggtctttactatctt
tcacaagaaaaagatgatgctaaaggtcaaggtcgttattttggttcttataacgaaatg
atgaaggcatatgaagtaaaagtgcttgatttgcacgctagaatagcacttcctttttca
gagattaaaatcaaaaaatcaaatgctttacaagaaaataaatacatcatttcaacagtt
ggaaagtttattttaaatagaatttttcctgataatttcccttttatctttgataataaa
gttgatgatttagaactaaattatgataaccagttagcaaaatatttagtgccaatggga
acaaatattccacaatacatccaacaacttcctttaaatgctgcactaactaaaaaagat
attgctaaaatagtacgtcaaatttttgatacttatgattacgtagtttcaaaagaagat
gtagctagtgtaattaataaattagattttgaaaattatcacgattctttacttttgtac
aaaaaactactggatttcaaaggtgaaccactttctattactcatgcaatgaaactagct
gaatttacaacagctgaatttgaacttctaacaagaattaacaacatccattcagttaat
aaaattagagtttttgaagtaaaagacaaagtagaaattcttgaaaaagtgtgatttaat
tatgtaaatgtagttgcagctattttagatgatattaaagatcttggatttgtgtactct
acaaattctggtgtttctatgtctatttctgatattaaaatagcaccaaaaaaacaagaa
tatctaaaagaaggtgaagactatatcaatcaattaaaccacttctacgcacaaggttga
atcactgatgatgaaagatatattctttcaattaacaaatgaacggctgtaaaaaatgaa
atccaaaaaaatctaaacgaaacagttgaacttgatccaaaaaattcactagttattatg
atgaaatcaggagctaaatcaaatatgtctaacttcgttcaattagctggaatgcgtgga
ttgatggcaaataacgttaaagctctaaaggtagatgctgaaaatgaaagagttgttcgt
tcaattgttgaagtgccagttaaatcttcattcttagaaggtcttacatcatttgagttc
tattcttcaacacacggtgctcgaaaaggacttaccgatacagcgcttaacacagctaaa
tcaggttatttaactcgtcgtttagttgatgtagcacaaaacattgttgttactcaaaat
gattgtttttctgactttggatttgtagtaaaacaaattattgatactaaaacaaacaca
acaattgttcctttagcagaaagaattgaaggtagatttttaaacaaagatgtagtaagt
ccagatggtgaagtactagcacaaacaggtgattttattaatgcccatttagctaaaaaa
atagttgattctggagtaacagcagtcgaaatccgttccattttatcttgtcatactaaa
aatggtgtatgtaaaaaatgttatggtaaagatttagcaacaaacagattagtagctatt
ggtgaagcagttggaattattgctgcacaatcaatcggtgagcctggtacacagttaaca
atgcgtactttccataccggaggggttgctggtgttgaagatattacaggtggatttact
cgtttaattgaactaatcgatgcacacgaacatccatgaggtcgtcctgcacaaatttct
ccagtgcacggagttgttgctaaaattgaatcagttaaaaacaaagaagatggacaactt
acaggttctactttaattacaattgagtacaaaaatgaagaaaatttagatgcatacaaa
ataattagagttgcttcaaatcaaaaattaagagtacaaatcggtgataaagttgttcca
ggtcaaaaacttgttgaaggtccaattattctaaaagaattattaaattacgctgatgct
agaacattacaaaactatcttttaaaagaaattcaaagaatttatcgtatgcaaggtatt
acaatttcagataaatatattgaaattattattagacaaatgctttcaaaaattcaaatt
attgacaatggagattcagatttcttcatcggttcaattgtagatatttttgattaccaa
gaagtaagtggaaaactaatagcagaaggaaaaagacctccttttggaaacattatcatt
aaaggagcaaaacaaattcctttactttctaactcattcttagctgctgcatcatatcaa
gaaacttcaaaaattttagttcattcagtaatttcttctcaagttgatagattagaaggt
cttaaagaaaacattattgttggtcacaaaattccagccggaacaaactctaattttgaa
cataaatccaaatatgacattagagatccatattcattctttaaaccacaaattaataaa
aatcgttaa
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