Mesomycoplasma hyorhinis GDL-1: MYM_0466
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Entry
MYM_0466 CDS
T01730
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mhh
Mesomycoplasma hyorhinis GDL-1
Pathway
mhh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYM_0466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhh03019
]
MYM_0466
Messenger RNA biogenesis [BR:
mhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MYM_0466
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AEX14223
LinkDB
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Position
complement(547563..549338)
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AA seq
591 aa
AA seq
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MSINYNEDTKDKNSKIIPTKFFGLGGMQEIGKSTLVIEHASDIVIIDSGVKFADIFTTGV
KGMIPDYSYLQKNQNKIKGLFITHGHEDHIGGIVYLIQQVHIKTIFAPRIAIQYLRARMD
EFGLKIKIKFIEIEKDAVHTFDHLSVDFWTAQHSIPDAFGIRVSSKNGSLMLTGDFRFDY
TPIGNYTDFSKLKQIGNENLTALFSDSTNAMRPSHSPSEKDILKDIEYHIKNATKKVIIT
AFASNLTRIKAIIDLGIKLDKKIVTFGRSMINGVKIGRKIGYINSPDNIFIDKKNISKYD
PNEILILTTGSQGEQLAALDKMSYNKHPHVKIGNKDVIIFSSSPIPGNRIKIELLINRLY
KLNAIIKENGSDGYLHTSGHAYKEEHEKIFELTKPKYFFPYHGEYRMCLAHKQTAIESGI
KATNVIIPDLGEVYEMVNQKITKSKEVITTGPVYIDGYVVSTANSQILKEREELRENGFV
FILTAIDKKTNSIIGRSKVISRGAFFAKSSKNLLNEIRRLVHGAILFTIKNESKWDIPQL
KQLIKNRLTTFFYKEKRRKPVILSSFLFVDEKYDFLQDYAKTLSFEINDKS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaactacaatgaggatacaaaggataaaaattcgaaaattattcctactaag
ttttttggtcttggaggaatgcaagaaatcggaaaatcgactttagtaattgaacacgct
tcagatattgtaataatagattcaggggttaaatttgcagatatttttaccacaggagtt
aaaggaatgattcctgattattcttatttgcaaaagaatcaaaacaaaattaaaggttta
tttataactcatggacacgaagatcatattggtggaattgtttatttaattcaacaagtg
catattaaaactatttttgcaccaagaatagcgattcagtatttaagagcaagaatggat
gaatttggtttgaaaattaagatcaaatttattgaaattgaaaaagatgcagtacatact
tttgatcatttaagtgtagatttttgaactgcgcaacattctattcctgatgcttttgga
attagagttagttcaaaaaacggttcacttatgttaacaggagattttaggtttgattac
acaccaattggaaattacactgatttttcaaaattaaaacaaattggtaatgaaaattta
actgctctgttttcagattcaacaaacgctatgagaccaagtcattccccaagtgaaaaa
gacattttaaaagacattgagtatcatattaaaaatgcaactaaaaaagtaattattact
gcttttgcttctaatttaacaagaattaaagcaattattgatctaggaataaagctagat
aaaaaaattgttacttttggaagaagtatgattaatggggtaaaaataggtagaaaaatt
ggttatattaactcaccagataacatttttattgataagaaaaacataagtaaatatgat
ccaaatgaaattttaattttaacaacaggttctcaaggagaacaattagctgctttagac
aaaatgtcatataacaaacatcctcacgttaaaattggcaataaagacgtgattattttt
tcttcatctcccattcctggcaatagaatcaaaattgaattattaattaatagattatat
aaattaaatgcaattattaaagaaaatggatcagatggttatctgcatacttcaggtcat
gcttataaagaagaacatgaaaaaatctttgagttgacaaaacctaaatattttttccct
tatcatggcgaatatcgaatgtgtttagcgcacaaacaaacagctatagaatcaggaatt
aaagcaacaaatgtaattattcctgatttgggtgaagtttatgaaatggttaatcaaaaa
attaccaaatcaaaagaagtaattacaacaggacctgtttacattgatggttatgttgtt
tccacagcaaattcacagattttaaaagaaagagaagaactaagagaaaatggttttgtt
tttatactaactgcaatagataaaaaaaccaattcaattattggaagatcaaaagtaatt
tctcgtggtgctttttttgccaaaagttcaaaaaatcttttaaatgaaataagaagatta
gtgcacggagcaattttatttacaattaaaaatgaatccaaatgagatattccacagcta
aaacaactaattaaaaatagattaactaccttcttttataaagaaaaaagaagaaaacca
gtgattctatcttcgtttttatttgtagatgaaaaatatgattttctacaagattatgca
aaaacattgtcttttgaaataaatgataaaagttag
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