Methanothrix harundinacea: Mhar_0149
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Entry
Mhar_0149 CDS
T01990
Name
(GenBank) Phosphoesterase, RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mhi
Methanothrix harundinacea
Pathway
mhi03410
Base excision repair
mhi03430
Mismatch repair
mhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Mhar_0149
03430 Mismatch repair
Mhar_0149
03440 Homologous recombination
Mhar_0149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhi03400
]
Mhar_0149
DNA repair and recombination proteins [BR:
mhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Mhar_0149
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Mhar_0149
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mhar_0149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AET63540
UniProt:
G7WKR1
LinkDB
All DBs
Position
complement(161642..162934)
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AA seq
430 aa
AA seq
DB search
MKRLEKLAKPAASSLLECENVRVISHNDADGITSAGLICTALRRANIPFHATLVSRLDQQ
VIDSVEPPVVFCDMGSGKPHLISKIEGEVFVFDHHTPVGDIDCVHVNPHLVGVDGAFEMS
GSGTVYTVVREMGDNVDLAGLALVGALGDRQMMVGANRTILEEAAASGVVYVAPGLKMDD
GPLVEVLAGSLDPLLEITGDPGRAKAFLEEVGVSGELPRIGRKELSRLSTALVLKLLLQG
STAADSVVGETIRLKREVVENAFELMWILNSCGKMKETGMALTLCMRDKAFLGECRKIDR
DYRAQILEEVRLVQERLRETENLRYAVLNEMDAAGVVCGLSVRYLYADRPMLILNRSEGI
VKVSARGNRLLVFCGLDLSSALKGAAEAVGGNGGGHSVASGASIPLGSEEEFIAAVDGAV
GRQLSEGRRR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggctggagaagctggcgaagcccgccgccagctccctcttggagtgcgagaac
gtcagggtcatatcccacaacgatgccgatgggataacctccgcgggcctgatctgcacc
gccctcaggcgggcgaatataccctttcatgccaccctggtcagcaggctcgaccagcag
gtcatcgactccgtcgagccgccggtggtcttctgcgacatggggagcggaaagccccat
cttatatccaagatagagggggaggtcttcgtcttcgaccatcatacccccgtcggggat
atcgactgcgtccacgtcaacccccacctggtgggggtcgacggcgccttcgagatgagc
ggctcggggacggtctacaccgtcgtccgggagatgggggataacgtagacctcgcgggc
ctcgccctggtgggggccctcggcgaccggcagatgatggtgggggcgaacaggacgatc
ctggaggaggcggcggcctcgggggtggtgtatgtggcccccggcctcaagatggacgac
ggccccctggtggaggtcctggcggggtccctcgaccccctcctggagatcaccggcgat
cccgggagggcgaaggccttcctcgaggaggtcggagtatccggcgagcttccaaggatt
ggcagaaaggagctctcccgcctctcgaccgccctggttctcaagctcctcctgcagggg
agcactgccgccgactccgtcgtcggtgagacgatcaggctgaagagggaggtcgtagag
aacgccttcgagctgatgtggatcctcaactcctgcggcaagatgaaggagacggggatg
gccctcaccctctgcatgagggataaggccttcctcggggagtgcaggaagatcgaccgg
gattacagggcccagatcttagaggaggtccgcctcgtccaggagcggcttcgggagacg
gagaacctccggtacgccgtcctcaacgagatggacgccgcgggggtcgtctgcggcctc
tctgtcaggtacctctacgccgataggcctatgctcatccttaacaggtccgaggggatc
gtcaaggtctcggcccgggggaaccgcctcctcgtattctgcggcctggacctctcttcc
gccctgaagggggcggcagaggcggtgggcgggaacggcggggggcacagcgtcgccagc
ggcgcctcgatccccctcggatcggaggaggagttcatagccgccgtcgatggggcggtg
ggccggcagctctcggaggggaggaggagatga
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