Methanothrix harundinacea: Mhar_0588
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Entry
Mhar_0588 CDS
T01990
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhi
Methanothrix harundinacea
Brite
KEGG Orthology (KO) [BR:
mhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhi03016
]
Mhar_0588
Enzymes [BR:
mhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mhar_0588
Transfer RNA biogenesis [BR:
mhi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mhar_0588
Prokaryotic type
tRNA splicing ligases
Mhar_0588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AET63966
UniProt:
G7WNJ0
LinkDB
All DBs
Position
605607..607028
Genome browser
AA seq
473 aa
AA seq
DB search
MLNRIDDYIFEVPIGHQKGMRVPGRIFISERLLEQVESGTLDQVANVATLPGIVNYSMAM
PDAHLGYGFPIGGVAAFREDGGVISPGGVGFDINCGVRMLRTDLLAEDVAPMMTNLVEDL
FHDVPSGVGAKGRLRVSEHELDEAFTRGAAWAVEAGFGVPEDLEHCEEGGRMEGAKPDQV
SLKARKRGRPQLGTLGSGNHFLEIQRVDEIFDDDLAKRFGLFRGQITVMIHCGSRGAGHQ
ICTDHLQVLSRAVKKYGIELPDKQLACAPLGTPEAENYFGAMAAAANYAWANRQIISAWT
REVFERYFPDARLDLVYDVAHNVAKVEEHEVDGSRERLYVHRKGATRAFGPGRPEIPMAY
REAGQPVIIPGSMGTPSYVLCGSAGAMRLTFGSACHGAGRIMSRTQAKKTYAGAEVKDVL
TRRGIKVMATHPKMLAEEAPEVYKPSFEVVDVVHHLDIARKVAKVVPLGVSKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacaggatagacgattacatatttgaggtgccgatcggccaccagaaggggatg
cgcgtcccgggacggatcttcatctccgagaggctcctcgagcaggtggagtccggaacc
ctcgaccaggtggcgaacgtcgccaccctccccgggatagtcaactactcgatggcgatg
cccgatgctcatctcggctacggctttcccatcggcggcgtcgccgccttccgggaggat
gggggggtgataagccccgggggcgtcggcttcgacataaactgcggcgtccggatgctg
aggacggaccttctggcggaggatgtggcgccgatgatgacgaacctcgtcgaggacctc
ttccacgacgtcccctccggcgtcggggcgaaggggaggctccgggtctcggagcacgag
ctcgacgaggccttcacccggggggcggcctgggcggtggaggcggggttcggcgttcct
gaggatctcgagcactgcgaggaggggggccggatggagggggcgaagcccgaccaggtg
agcctgaaggcgaggaagagggggcgtccccagctcgggaccctggggagcggaaaccac
ttcctggagatccagagggtcgacgagatcttcgatgacgacctcgccaaaaggttcggc
ctcttccggggccagatcaccgtcatgatccactgcggatcgaggggggcaggccaccag
atctgcaccgaccacctccaggtcctcagccgggcggtaaaaaagtacggtatagagctc
cccgacaagcagctcgcctgcgcgccgttggggacgccggaggcggagaactacttcggg
gcgatggcggcggcggcaaactacgcctgggcgaaccgtcagatcatctccgcctggacg
agggaggtcttcgagaggtacttccccgacgctcggctggacctcgtctacgacgtcgcc
cacaacgtcgccaaggtggaggagcacgaggtcgacggctcgagggaaaggctctacgtc
caccggaagggggcgacgagggccttcggccccgggaggcccgagatcccaatggcgtac
agggaggcgggccagccggtgatcatacccgggtcgatggggaccccctcctacgtcctc
tgcgggagcgccggggcgatgcggctcaccttcggctccgcctgccacggggccggaagg
atcatgagcaggacccaggcgaagaagacctacgccggggcggaggtgaaggatgtcctg
acgaggcgcgggatcaaggtgatggcgactcacccgaagatgctcgccgaggaggccccc
gaggtctacaagccgagcttcgaggtcgtcgacgtcgtccaccacctggatatagcgagg
aaggtggcgaaggtcgtccccctgggagtctccaagggatga
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