Methanothrix harundinacea: Mhar_0986
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Entry
Mhar_0986 CDS
T01990
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mhi
Methanothrix harundinacea
Pathway
mhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mhar_0986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhi03019
]
Mhar_0986
Messenger RNA biogenesis [BR:
mhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mhar_0986
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AET64356
UniProt:
G7WLY1
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Position
1074307..1075647
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AA seq
446 aa
AA seq
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MKEIGIVAIGGYEEIGRNMTAIRIGHDIVIMDMGLRLDRVQIHEDTDVERLRPSELISMG
AIPNDSVMKDVDGKVKTIACTHGHLDHIGAISKLAHKYKAPIVGTPFTADLIKQEIEAEK
LQGTKNEVVTMNAGKKMQVSSDVELEFIRVQHSIVDCVFAAIHTPRGVILYANDFKMDRS
PTLGQPPDFARLKKLENEGVLALITETTNAGISGKTPSEQIAKDLVWDVLMGTEETKSGV
LLTTFSSHIARIRAIIEAAHEMGRKPVLLGRSMEKYWGTAKRVGYAPKSNDLPVYGRRKS
VDKFFKRMMQEGKDKYLPIMTGHQGEPGAVLSRVASGETDYMIESGDKVIFSAGIIPQPL
NKSNRHIVETKLKMRGARVYDNVHVSGHACVEDHWELLRMINPEHVIPSHGTFETHGKYL
SMAEDTGYELGYTFHIMRNGQELLLP
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagattggaattgtagccatcggaggctacgaagagattggaaggaacatgacc
gccatcagaatcggtcatgacatagtgattatggacatgggcctccggctggacagggtc
cagatccacgaggatacggacgtagagcggctccgcccctccgagctgatatccatgggg
gccatccccaacgacagcgtcatgaaggacgtggacgggaaggtgaagacgatagcctgc
acccacggccacctagaccacatcggagcgatatccaagctcgcccacaagtacaaggct
cccatcgtagggacccctttcaccgcggacctgataaagcaggagatagaggctgagaag
ctccaggggacgaagaacgaggtggtgacgatgaacgccggcaagaagatgcaggtctcc
tctgacgtcgagctggagttcatcagggtccagcacagcatcgtcgactgcgtcttcgcc
gccattcacaccccccggggcgtgatcctctacgccaacgacttcaagatggaccgaagc
cccaccctcggccagcctcccgacttcgccaggctgaagaagctggagaacgagggggtt
ttggccctgatcaccgagacgacgaacgccgggatatcggggaagaccccctcggagcag
atagcaaaagacctggtctgggacgtcctgatggggacggaggagacgaagtccggggtc
cttttgacgaccttctcatcccacatagcgaggatccgggcgatcatcgaggcggcccac
gagatggggcgaaagccggtgttgctgggcagatcgatggagaagtactgggggacggcg
aagagggtggggtacgcccccaagtccaacgacctccccgtctacggtaggagaaagagc
gtcgacaagttcttcaagaggatgatgcaggaggggaaggataagtacctcccgatcatg
accggccaccagggggagccgggggcggtcctcagcagggtcgccagcggcgagaccgat
tacatgatcgagtccggggacaaggtgatattcagcgccgggatcataccccagcccctg
aacaagtccaaccggcacatcgtggagacgaagctgaagatgaggggggcgagggtctac
gacaacgtccacgtctcgggccacgcctgcgtcgaggaccactgggagctcttgaggatg
ataaatcccgagcacgtcatccccagccacgggaccttcgagacccacggcaagtacctc
tccatggcggaggacaccggctacgagctgggatacaccttccacatcatgaggaatggc
caggagctgctcctcccctga
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