Methanothrix harundinacea: Mhar_1445
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Entry
Mhar_1445 CDS
T01990
Name
(GenBank) ATP-dependent RNA helicase, putative
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mhi
Methanothrix harundinacea
Pathway
mhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mhar_1445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhi03019
]
Mhar_1445
Enzymes [BR:
mhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mhar_1445
Messenger RNA biogenesis [BR:
mhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mhar_1445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
P-loop_SecA
AAA_22
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AET64809
UniProt:
G7WKI2
LinkDB
All DBs
Position
complement(1554203..1555459)
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AA seq
418 aa
AA seq
DB search
MLFEDLDIAEPLQRALTKEGYANPTPIQAEAIPHLLRGEDLLGIAQTGTGKTAAFVLPVL
QRISEERRRTVPGAPRALVLAPTRELAAQIDESFGTYGQFLQFSHAAVFGGVSQEPQVKA
LSRGVEALVATPGRLLDLMEQGHIDLKGIEFFVLDEADRMLDMGFAKDVHRIVSALPKKR
HSLFFAATMSREIGELAGRLLKDPVRVEVAPQATPVESIEQRIFFVDQKEKNPLLIGLLQ
QKFLKRVLVFTRTKRRADRVAKVLTRSGIRADAIHGDRTQNQRLAALRGFKAGRLQVLVA
TDIAARGIDVEDISHVINYDLPNEPESYVHRIGRTGRAGRAGTAYSFCSAEERSFLRDIE
RLTRTKIREVEHRYHSEEAKNASGAASEPAPGGSKRPPRRARGAAPSPQRSRRPGPRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttgaagatttggatattgcagagccgctacagcgagctcttacgaaagaaggc
tatgccaatccgacgccgatccaggcggaggcgatcccccatctcctgaggggggaggat
ctcctcggcatagcccagaccgggaccggcaagaccgctgccttcgttttgcccgtcctc
cagaggatctccgaagagaggagaaggaccgtcccgggcgccccccgggccctggtgctg
gcgccgacccgggagctggcggcccagatagacgagtccttcgggacctacggccagttc
ctccagttcagccacgccgccgtattcggaggagtctctcaggagccccaggtgaaggcc
ctttctcgaggcgtcgaggccctcgtcgccacccccggccggctcctggacctgatggag
caggggcacatagacctcaaggggatcgagttcttcgtcctcgacgaggcggacaggatg
ctggacatgggcttcgcaaaagacgtccataggatcgtctcagcccttcccaagaagcgc
cactccctcttcttcgccgccaccatgtcgcgggagatcggcgagctcgccggaaggctc
ctcaaggaccccgtcagggtcgaggtggctccccaggcgacgccggtggagagtatagag
cagaggatattcttcgtcgaccagaaggagaagaacccgctcctcatcggcctcctccag
cagaagttcctgaagagggtcctcgtcttcaccaggacgaagcggcgggccgaccgggtg
gcaaaggtcctcaccagaagcgggatccgggccgacgccatccacggcgacagaacccag
aaccagcggcttgccgccctgaggggcttcaaggccggccggttgcaggtgctggtggcg
accgacatcgccgcccgcggtatcgacgtcgaggatatatcccacgtaataaactacgac
ctccccaacgagcccgagagctacgtccacaggatcggccggacgggcagggcgggtaga
gctggaactgcgtactccttctgctccgccgaggagcggagcttcctccgggatatcgag
aggctcacccggacgaagatccgagaggtggaacatcgataccattccgaggaggcgaag
aacgcctcgggcgcggcgtccgagcccgccccgggggggtcgaagaggcccccgaggagg
gcgaggggagcggccccgtccccgcagaggtcgcgccgtcccgggccgcggcgctag
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