Methanothrix harundinacea: Mhar_2021
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Entry
Mhar_2021 CDS
T01990
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mhi
Methanothrix harundinacea
Pathway
mhi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Mhar_2021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhi03019
]
Mhar_2021
03009 Ribosome biogenesis [BR:
mhi03009
]
Mhar_2021
04131 Membrane trafficking [BR:
mhi04131
]
Mhar_2021
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mhi04147
]
Mhar_2021
Messenger RNA biogenesis [BR:
mhi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Mhar_2021
Ribosome biogenesis [BR:
mhi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Mhar_2021
Membrane trafficking [BR:
mhi04131
]
SNARE
SNARE associated proteins
Others
Mhar_2021
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Mhar_2021
Exosome [BR:
mhi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Mhar_2021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
TIP49
AAA_14
AAA_2
AAA_22
AAA_33
AAA_28
IstB_IS21
nSTAND3
Mg_chelatase
ABC_tran
AAA_18
AAA_17
RNA_helicase
AAA_7
ATPase
AAA_lid_PRS2_C
PhoH
NPHP3_N
AAA_3
ATP-synt_ab
TsaE
AAA_19
Parvo_NS1
bpMoxR
AAA_24
Zeta_toxin
DUF815
DUF5906
Motif
Other DBs
NCBI-ProteinID:
AET65377
UniProt:
G7WR74
LinkDB
All DBs
Position
complement(2182217..2184379)
Genome browser
AA seq
720 aa
AA seq
DB search
MTMTTTLRVAEAYHRDVGRGIARLAQDLISDLGVEGGAVVEIQGRRTAYAVAWQASPKEA
KDVIRIDGNLRSNLGVGIDDRVTVRKSEARPAKRIVLAPTSRTRLVGGPQYLLRTLLGRP
IVKGEQLKIEMISSALGFVVVSTAPKGPVVVAAETEIKILKDTLEEMAVRDVSYEDIGGL
GKEIRMVREMIELPLRHPEIFERLGIRPPQGLLLFGPPGTGKTLIARAVASETEANFISI
SGPEITSKFYGESEKRLREIFEEAERSAPSIVFIDEIDSIAPKREEVAGDLERRVVAQLL
SLMDGLAYRGEVIVIAATNRPNSLDPAIRRGGRFDREMEIGIPDKNGRLEILYVHTRGMP
LSEDVDLEGIAERTHGFVGADLASLCKEAAMHTLKGLIPDLDAEEAIPLRVLEELVVAEE
DFRFALKMIEPSAMREVFVEVAEVHWYEVGGLDRAKEDLVEAVEWPLKYPEAFDSIGIRP
PRGVLLFGPPGTGKTLLAKAVATESGVNFISVKGPELLSKWVGESERAVREVFRKAKQAA
PSLIFFDEVDAVVPARGSGLDSHATERVVSQFLTELDGVVELKDVVVLAATNRPDLLDPS
LLRPGRFDRLIRIPIPDRVARERIFEIHLSGMPLAGDVSASRLAEVTEGWTGADIETLCR
EAGMTALREKILPGMRREELILQGVQVEGRHFREAFERAKPHLTPEMAADYQRLMKDFEV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgaccacaactctcagggtggcggaggcctatcacagggatgtcggccggggg
atcgccaggctcgcccaggatctgatcagcgatctcggcgtcgaagggggcgcggtggtg
gagatccaggggaggaggaccgcctacgccgtcgcctggcaggcctcgccgaaggaggcg
aaggacgtcatcaggatagacgggaaccttcggagcaacctcggggtcgggatagacgac
cgggtgaccgtccggaagagcgaagcgaggccggcgaagaggatcgtcctcgcccccacc
agcaggacgaggctcgtcggaggcccccagtacctcctccgaacccttctggggaggccg
atcgtgaagggggagcagctgaagatcgagatgatctcgtcagccctcggcttcgtcgtg
gtgagcaccgccccgaaggggccggtggtggtggctgccgagacggagatcaagatcctg
aaggataccctggaggagatggcggtgagggacgtctcctacgaggacatcggaggcctc
ggaaaggagatcaggatggtccgggagatgatagagctccccctccgccaccccgagatc
ttcgagcggctggggatcaggcctccccagggcctcctcctcttcggcccgccggggacg
ggcaagaccctcatcgcccgggcggtggcgagcgagacggaggcgaacttcatcagcatc
agcggccctgagatcacctccaagttctatggcgagtcggagaagaggctccgggagatc
ttcgaggaggcggagaggagcgccccctccatcgtcttcatcgacgagatcgactcaata
gccccgaagcgggaggaggtggcgggggacctggagcggagggtcgtcgcccagctcctc
tccctcatggacggcctcgcctaccggggcgaggtgatcgtcatcgccgccaccaaccgg
cccaactccctcgacccggcgatccggcggggggggaggttcgatcgggagatggagatc
gggatccccgacaagaacgggaggctcgagatcctctacgtccacacccgggggatgccc
ctatcggaggacgtggacctggaggggatcgccgagaggacccacggcttcgtcggagcc
gacctcgcctccctctgcaaggaggcggcgatgcacaccttgaaggggctcatccccgac
ctcgacgcggaggaggcgatacccctccgggtcctggaggagctggtggtggcggaggag
gacttcaggttcgccctgaagatgatcgagccctccgccatgagggaggtctttgtggag
gtggcggaggtccactggtacgaggtcggcggcctggaccgggcgaaggaggatctggtg
gaggcggtggagtggcccctcaagtaccccgaggccttcgactcgatcgggatcaggccg
ccccggggtgtcctcctcttcggcccgccggggacgggcaagaccctcctagccaaggcc
gtggccaccgagagcggggtgaacttcatctcggtgaagggccccgagctcctctccaag
tgggtcggagagtcggagcgggcggtgagggaggtcttccggaaggcgaagcaagcggct
ccatccctcatattcttcgacgaggtcgacgccgtcgtccccgccaggggctcggggctc
gactcccacgccaccgagagggtggtgagccagtttctgacggagctcgacggcgtcgtc
gagctgaaggacgtcgtcgtcctcgccgccaccaaccggccggacctcttggacccctcc
ctcctccgcccgggaaggttcgaccgattgatcaggatccctatccccgaccgggtggcc
cgggagcggatattcgagatacacctctcagggatgcccctggccggggacgtctccgcc
tcccgcctcgcggaggtgacggaggggtggacgggggcggacatcgagaccctctgccgg
gaggcggggatgaccgccttgagggagaagatcctccccgggatgaggcgagaggagctg
atcctccagggggtccaggtggaagggcggcacttccgggaggccttcgagagggcgaag
ccccacctgactccggagatggcggcggattaccagaggctgatgaaggatttcgaggtg
tag
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integrated database retrieval system
