Metallosphaera hakonensis JCM 8857 = DSM 7519: DFR87_06580
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Entry
DFR87_06580 CDS
T05471
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
mhk
Metallosphaera hakonensis JCM 8857 = DSM 7519
Pathway
mhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFR87_06580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhk03019
]
DFR87_06580
Messenger RNA biogenesis [BR:
mhk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DFR87_06580
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
DFR87_06580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AWR99422
UniProt:
A0A2U9ITW5
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All DBs
Position
complement(1337597..1338439)
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AA seq
280 aa
AA seq
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MSMTPTNENIIPLIKKESIVSLLERGTRSDGRKFTDYRQLTITLGYAKKADGSALVKLGD
TTVLAGVKVEEDEPYQDTPNQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRSLRD
SKSVDLSGLVIEPGKKVWTVWVDISVLDYGGNVLDACTLAAIAALYDAKLPKVVKENDTI
NIVKEERVSSLPIRYPVVTVSVGKIGKFLIIDPDLEEEGIMDAKISFSYIPSGHIVGIQK
SGAGSFSQQEIETAESIAYQTSQKLLEELKNQIGIGKGES
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgacacctacaaatgagaacataataccgctgataaagaaagaaagtattgtt
tcgcttctagagcgaggaacaaggagcgatgggagaaaatttaccgattatagacaacta
acaattactttgggttatgccaagaaggctgatggttcagctcttgttaagttgggagat
acaacagtcttagctggggtaaaagtagaggaagacgaaccttatcaagataccccaaat
caaggaaatttagtggtgaatgcagaacttcttcctctagcctacgagacttttgagcca
ggtcctccagatgagaacgctattgaactttctagagtggttgacagaagcttgagagac
tcgaagtcggttgacttaagtgggttagttatagagcctgggaagaaagtctggactgtt
tgggttgatatctctgttctagattatggaggaaatgttttagacgcttgtacattagct
gcaatagcagctctatatgatgccaaactacctaaggtagttaaagagaatgacactatc
aatattgtgaaggaagagagagtgtcttcacttccgatcagatatccagtggttactgtg
agtgtgggtaagataggaaagttcctaattatcgatcctgacctagaagaggaaggaatt
atggacgcaaaaatatcgttttcatatattccctctggtcatattgttggaatacaaaaa
tcaggagcaggtagctttagtcagcaggagattgaaactgctgaaagcatagcgtatcag
actagtcagaagttattagaagagcttaaaaatcaaatagggattgggaaaggtgagtcg
taa
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