Metallosphaera hakonensis JCM 8857 = DSM 7519: DFR87_09900
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Entry
DFR87_09900 CDS
T05471
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhk
Metallosphaera hakonensis JCM 8857 = DSM 7519
Brite
KEGG Orthology (KO) [BR:
mhk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhk03016
]
DFR87_09900
Enzymes [BR:
mhk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DFR87_09900
Transfer RNA biogenesis [BR:
mhk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DFR87_09900
Prokaryotic type
tRNA splicing ligases
DFR87_09900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWS00674
UniProt:
A0A2U9IXE7
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All DBs
Position
complement(1924017..1925459)
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AA seq
480 aa
AA seq
DB search
MDISIKRVNSFEWRIDKNGCMRVPVTVFADDVLIEKMKQDLTLKQATNVACLPGVQESVY
VLPDGHQGYGFPIGGIAATSIDEDGVVSPGGIGYDINCGVRLLRTNLDFSEVKPKLVDLV
EELHRTVPSGVGSEGRVKLSSQELDNLLQEGVKWAVEKGYGWAEDMNNIEQRGSWELADP
SKVSQVAKQRGASQLGTLGAGNHFLEVQVVDKIYDERIAKALGVTREGQITVMVHTGSRG
LGHQVASDYLQIMERAMKKYGVEVPDRELAAIPFNSREGQDYFRAMVAGANFAWSNRQLI
TNWVRESFGRVFKTDPEKLDLHIIYDVAHNIAKIEEYDIGGKRKKVLVHRKGATRAFPPG
SPEIPQEHRDIGQVVLIPGSMGTASYVMAGIPEGRRSWFTAPHGAGRWMSREAAVRNYPA
NSVVGSLEERGIIVRAATRRVIAEEAPGAYKDVDRVARVAHEVKIAKLVMRLRPIGVTKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggatatttctatcaagcgtgtcaattcctttgagtggaggatagataagaacggttgc
atgagggttcctgtgacggttttcgcagatgacgtgctcatagagaaaatgaaacaggac
ttgacccttaagcaggcaactaacgtggcttgtcttcccggcgttcaggaatcggtgtac
gtattgccagacggtcatcaaggatacggctttcccatagggggcattgcggcaacgtca
atagacgaagacggcgtggtgagccctgggggaataggttacgacataaactgtggagtt
agactacttagaactaacctggatttctctgaggtgaagcctaagttagttgacttagtc
gaggagcttcataggaccgtcccaagcggggtgggaagtgagggaagagtcaagctgtct
tctcaagagctcgataatttacttcaagagggagttaagtgggcagtggagaagggctac
ggttgggcggaggacatgaacaatattgagcagagaggtagttgggaattagcggatccc
agtaaggtgagccaggtagctaaacagaggggcgcgtctcaattgggaacccttggagca
ggaaaccatttccttgaggtccaggtggttgacaagatatatgatgagaggatagctaaa
gcgttgggggtaactagggaaggtcagatcacggtcatggtgcacacgggctccaggggt
ctcgggcatcaagtcgccagtgattacctgcagataatggagagggccatgaagaagtac
ggggtggaggtgcccgatagggaattggccgcaattccctttaatagcagggagggccag
gactactttagagccatggtagccggtgcaaacttcgcgtggagtaacaggcaattgata
accaattgggtcagagagagctttgggagggtgttcaagaccgatccagagaaactcgat
cttcacatcatttacgatgtggcccataacatagctaagatagaggagtacgatataggc
ggaaagagaaaaaaggttctggttcaccgtaagggcgccactagagcgtttccaccgggt
agtcctgagataccccaggaacatagggacataggccaagtggttctaattccgggaagt
atgggaactgccagttacgtaatggcaggaattccagaggggagacggtcttggttcact
gcaccacatggggcaggcagatggatgtcgagggaggctgcggtgaggaattatccagca
aactcagtggttggatcgttggaggaaagggggataatagtcagggctgctacacggagg
gttatagccgaggaggcgcctggagcctataaggacgtggatagggtagccagagtggca
catgaggtgaagatcgctaagcttgtcatgaggctgagacccatcggggtgaccaagggt
tga
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