Metamycoplasma hominis ATCC 23114: MHO_1900
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Entry
MHO_1900 CDS
T01122
Symbol
vacB
Name
(GenBank) Vacb-like ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mho
Metamycoplasma hominis ATCC 23114
Pathway
mho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MHO_1900 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mho03019
]
MHO_1900 (vacB)
03016 Transfer RNA biogenesis [BR:
mho03016
]
MHO_1900 (vacB)
Enzymes [BR:
mho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MHO_1900 (vacB)
Messenger RNA biogenesis [BR:
mho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MHO_1900 (vacB)
Transfer RNA biogenesis [BR:
mho03016
]
Prokaryotic type
tRNA degradation factors
MHO_1900 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
HTH_24
Motif
Other DBs
NCBI-ProteinID:
CAX37324
UniProt:
D1J7X7
LinkDB
All DBs
Position
227920..230073
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AA seq
717 aa
AA seq
DB search
MTYIKNFKNKNNNPKINEEQVLKCIRESDGITFIEIAKKLRIPAFLNFELSEILNNYLSK
KLIDTKSDEKYIAIYFLTKVQKEISITAKRLGFIDFEMQEESQTKVFSAFLAPFQLKAVL
DKDLLLANIYYYYENGIKKYKGDIIQILNHARKTIVGTIEKSANKLFFNAYDEKDRAKFE
IINEKECPDITKLKNSLVSCEILKPNNKKVAIAYKNIIGNINDKEHVIKKIIAQNDVNVN
FPQNLLEYVSSIPSFVSQEEINSRINLIDLMTVTIDGLDTKDFDDAISCYKNEKNNWKLF
IHIADVSYYVKENDLIDNEALLRGTSIYLPDRVIPMLPVELSNGICSLNPNEVRACITLE
LEIDKQGNNISYKIYPSVIKSNYRLTYNEVNDFYSNIKSVPDDVANMLLHARDLAKIIRS
KKISEGYVDFEIQESKVIMDGTKVVDIKVKEEGESEKLIEDFMVRANETVAQMMTNLKIP
SIYRIHEKPSPEKLTLLQELFNFCGFKDVKVPYDGEPKSFGEMIAKLKEHKFDDFIKMAL
LRTMQKAIYSSNNIGHFGLASKAYSHFTSPIRRYPDLLLHRLIRTYIFEKKEITPDLSET
LKQKISQIALMNSESEKNAMVVERSVVDVRKSEFFENLINKQFFATLVSIEKFGMFFNID
EYQTSVLVRFENLTIPTNKDNDFQASSKNKIYKAGNKYLITITSIDHEKGNVNATLA
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgacatatataaaaaattttaaaaataagaataacaaccctaaaattaatgaagaacaa
gtattaaaatgcataagagaaagtgatggaattacttttattgaaattgcaaaaaaatta
agaattcctgcttttttgaattttgaattatcagaaatattaaataactatttatctaaa
aaattaattgatacgaaaagcgatgaaaaatacatcgctatttattttctaactaaagta
caaaaggaaatatcaataactgccaaaagattaggatttattgattttgaaatgcaagaa
gaatctcaaactaaagtatttagtgcctttcttgcgccttttcaattaaaagcggtattg
gacaaagatttattgcttgcaaatatttattattattatgaaaatggcataaaaaaatat
aaaggcgatattattcaaattttaaatcacgcaagaaaaactattgttggaactattgaa
aagagcgcaaataaactgttttttaatgcttatgatgaaaaagatagggctaaatttgaa
attattaatgaaaaagaatgcccagatataacaaaattgaaaaattcattggtatcttgt
gagattttaaaaccaaataataaaaaagttgctattgcatataaaaatataattggtaat
attaatgataaagaacatgtgattaaaaaaatcattgcccaaaatgatgtaaatgtcaat
tttccacaaaatttattagaatatgtttcctcaataccttcttttgtttcacaagaagaa
attaattcaagaataaatttaatagatttaatgacagttacaattgacggtcttgacact
aaagattttgatgacgccatttcgtgttataaaaatgaaaagaataattgaaagttattt
attcatattgccgatgtttcatactatgttaaggaaaacgatttaatagataatgaggct
ttattgcgtggcacaagcatttacttacccgatagggttataccaatgttgccggttgaa
ttgtctaacggaatttgttcattaaacccaaatgaagtcagagcttgtataacattggaa
ttagaaatagacaagcaagggaacaatatatcatataaaatttatcctagtgttataaaa
tcaaattatagattgacttataatgaagttaatgatttttatagcaatataaaaagtgtt
cctgatgatgttgcaaatatgctgttgcatgcacgagatcttgcaaaaattattagaagt
aaaaaaatatccgaaggttatgttgactttgaaattcaagaatcaaaagttataatggat
ggaacaaaggttgttgatatcaaggtgaaagaagaaggcgaaagcgaaaaattaattgaa
gacttcatggttcgggcaaacgaaaccgttgctcaaatgatgactaatttaaaaattcct
tcaatttatagaattcacgaaaaaccttcacctgaaaaactaactttattgcaagaatta
ttcaatttttgtggatttaaggatgtaaaagttccttatgatggagaaccaaaatcattt
ggagaaatgattgcaaaattaaaagaacataaatttgatgattttattaaaatggcatta
ttaagaacaatgcaaaaagcaatatattcatcaaataatattggccatttcggtttagct
tcaaaagcttactcacattttactagtccaattagaagatatccagacttattgctacat
aggttgataagaacttatatttttgaaaagaaagaaataacacccgatttatcagaaacg
ctaaaacaaaaaataagtcaaattgctttaatgaatagtgaatctgaaaaaaatgcaatg
gttgttgaacgaagtgttgttgatgttagaaaatcggaattctttgaaaatttaattaat
aagcaattttttgcaacattagtatcaatagaaaaatttggaatgttttttaacattgac
gaatatcaaacaagtgttttagttcgttttgaaaatctcacgattccaactaataaagac
aacgattttcaagcatcatctaaaaataaaatctataaagcaggcaataagtatttaatt
actatcacttcgatagatcacgaaaaaggaaatgtaaatgcaacattagcttag
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