Mycolicibacterium holsaticum: K3U96_01030
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Entry
K3U96_01030 CDS
T07607
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mhol
Mycolicibacterium holsaticum
Brite
KEGG Orthology (KO) [BR:
mhol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhol03019
]
K3U96_01030 (hrpA)
Enzymes [BR:
mhol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K3U96_01030 (hrpA)
Messenger RNA biogenesis [BR:
mhol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K3U96_01030 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
PhoH
ABC_tran
AAA_25
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QZA12829
LinkDB
All DBs
Position
206804..210766
Genome browser
AA seq
1320 aa
AA seq
DB search
MGDKVRPDDAVSSISSAELRARLDGLTMRDAARLGRRLKHLRDAGPEELARFTEQLAAAE
ALVATRTAAVPAITYPDLPVSERRDEIARAINDHQVVIVAGETGSGKTTQLPKICLELGR
GIRGTIGHTQPRRLAARTVAQRIADELGTPLGETIGYTVRFTDQASDRTLVKLMTDGILL
AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAA
HFGGAENRCSGGAEHSGGAPIVEVSGRTYPVEIRYRPLEVPLETEDADDPDDPDHEVVRT
EIRDRTEAIVDAIAELEAEPPGDILVFLSGEREIRDTAEVLRGLLRDTEVLPLYARLPTA
EQQRVFAPHPGRRVVLATNVAETSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQ
ASAAQRAGRSGRTAPGVCIRLYSEEDFAARPRYTDPEILRTNLAAVILQMAALNLGEIES
FPFLDPPERRSIRDGVQLLQELGAFDRDGKITAIGRRLAQLAVDPRLGRMILAADAEGCV
AEILVLAAALSIPDPRERPADREDAARQKHARFADEDSDFVSYLNLWRYLRDQRKELSGN
AFRRMCRDEFLHYLRIREWQDLVGQLRGIARDMGIRESGEPADPAQVHTALLAGLLSHIG
LRDEAKGRGAREFQGARNSRFVLAPGSVLTKRPPRWVVVADLVETSRLYGRIAARIQPET
VERVAGDLVQRTYSEPHWDAQRGAVMAYERVTLYGLPLVPRRRVGYSQIEPELARELFIR
HALVEGDWQTRHHFFRDNARLREELEELEEKARRRDLLVGDEEIYALYDARIPAEVVSAK
HFDAWWRKQRHKTPDLLTFTREDLLRTDEAAEQPDAWRAGDLALPLSYRFEPGAADDGVT
VHVPVEVLARLGGDEFAWQVPAFREELITALIRALPKPLRRNFVPAPDTARAILGAITPG
DGPLLDAVQRELHRRTGVLVPIDAFDLDKLPSHLRVTFAVESPDGTELSRGKDLDALQHE
LAGPVRQAVADAVAGELERSGLRGWPDDLDELPRTVERDTVRGYPALVDAGVAVDVHVFA
SPAEQNSAMGPGTRRLLRLAVPSPVKTLERQLDPRTRLVLGANPDGSLQALLEDCTDAAI
DVLTPAPAWTRAEFAALRDRVTANLERTTGDIVARVQKVLAAAHDVQLAIPAEPGPAQAD
AIADIRAQLDALLPDRFVTATGAAHLADLTRYLTAIGRRLDRLPHAVGADRERMQRVHAV
RDAYDDLVAALSPTRAAADDVRDIARQIQELRVSLWAQQLGTPRPVSEQRIYRAIDAVLP
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacaaagtgcgaccagatgacgccgtttcgtcgatttcgtcggccgaactgcgg
gcccgcctcgacgggttgacgatgcgcgacgccgcccggctgggccggcggctgaagcac
cttcgcgacgccgggccggaggaactcgcccggttcaccgagcagctcgccgcggcagag
gcgctggtggccacccgcaccgcggcggttcccgccatcacctacccggaccttccggtc
agcgagcggcgcgacgagatcgccagggccatcaacgaccaccaagtggtcatcgtcgcc
ggggagaccggctcgggtaagacgacccagctgcccaagatctgcctggagctcggccgc
ggcatccgcggcacgatcgggcacacccaaccgcggcggctggccgcgcgtaccgtcgcc
cagcgcatcgccgacgaactgggcaccccgctcggcgaaaccatcggctacaccgtgcgg
ttcaccgaccaggccagcgaccgcaccctggtcaagctgatgaccgacggcatcctgctc
gccgagatccagcgcgaccgccggctactgcgctacgacacgctgatcctcgacgaagcc
cacgagcgcagtctcaacatcgacttcctgctcggctacctgcgcgagctgctgccgcgc
cggcccgacctcaaggtcatcgtcacctcggcgacgatcgagcccgagcggttcgccgcg
cacttcggcggtgccgaaaatagatgtagcggcggcgctgagcacagcggcggtgcgccg
atcgtcgaggtttccggacgcacctatcccgtcgagatccgttaccgcccactggaagtg
ccgctggaaaccgaggacgccgacgaccccgacgacccggaccacgaggtggtgcgcacc
gagatacgggaccggaccgaggccatcgtcgacgccatcgccgaactcgaagccgagccg
cccggcgacatcctggtgttcctgtccggcgaacgcgaaatccgtgacaccgcagaagtt
ctgcgcgggctgctgcgcgacaccgaggtgctgccgctgtatgcccggctgccgaccgcc
gaacaacagcgcgtgttcgcaccgcatcccgggcgccgcgtcgtgctcgccaccaacgtc
gccgagacgtcgctgacggtgcccggcatccgctacgtcgtcgacccgggcaccgcacgg
atctcgcgctacagcagacgcaccaaggtgcagcggttgccgatcgaaccgatctcgcag
gcctcggccgcccagcgcgccgggcggtcgggacgcaccgcaccgggggtgtgcatccgg
ctgtactccgaggaggatttcgcagcgcggccccgctacaccgatccggagatcctgcgc
accaacctggccgcggtgatcttgcagatggccgcgctcaatctcggtgagatcgaaagc
ttccctttcttagacccgcccgaacggcgcagtatccgcgacggcgtccagctgctgcag
gaactcggcgcgttcgaccgcgacggcaagatcaccgcaatcggcaggcgcctggcgcag
ctggccgtcgacccgcggctgggccggatgatcctggcggccgacgccgagggctgcgtc
gccgagatcctggtgctggccgcggccctgtcgatccccgacccgcgggagcggcccgcc
gaccgcgaggacgccgcccgccagaaacatgcccggttcgccgacgaggactcggacttc
gtgtcctacctcaacctgtggcggtatctgcgtgaccaacgaaaagagctgtccggaaac
gcgtttcgccggatgtgtcgcgacgagttcctgcactacctgcggatccgcgaatggcag
gatctggtgggccaactgcgcggcatcgcccgtgacatgggtatcagggaatccggtgaa
ccggccgacccggcgcaggtgcacaccgcgctgctggccgggctgctgtcgcacatcggt
ctgcgcgacgaggccaaagggcgtggcgccagggagtttcagggcgcacgtaactcacgg
ttcgtgctggcacccggctcggtgctcaccaaacgaccgccgcgctgggtcgtcgtcgcc
gacctcgtcgagaccagcaggctctacgggcgcatcgccgcgcgcatccagcccgagacc
gtcgaacgggtcgccggcgatctggtgcagcgcacctacagcgagccgcactgggacgcc
cagcgtggcgcggtcatggcctacgaacgggtcaccctgtacgggctgccgctcgtgccg
cgccgacgcgtcggctattcgcagatcgagccggaactcgcgcgtgagctgttcatccgc
cacgcgctggtcgaaggcgactggcagacccgccaccacttcttccgggacaacgcccgg
ctgcgcgaagaactcgaggagctcgaggagaaggcgcgcaggcgcgacctgctggtcggc
gacgaggagatctacgccttatacgacgcccgcattcccgcagaggtggtgtcggccaaa
cacttcgacgcgtggtggcgcaaacaacggcacaagacgccggacctgctcaccttcacc
cgagaggatctgctgcgcaccgacgaggccgccgaacaacccgatgcgtggcgggcaggc
gatctggcgttgccgctgagctaccggttcgagccgggcgccgcagacgacggcgtcacc
gtgcacgtcccggtcgaggtgctggcccgcctcggcggcgacgaattcgcctggcaggta
ccggcctttcgggaagagctgatcaccgcgctgatccgggcattgccgaaaccgttgcgc
cgcaacttcgttccggcgccggacaccgcacgcgccatcctgggtgcgatcacccccggc
gacgggccgctgctggacgccgtgcagcgcgaactacacaggcgcaccggcgtgttggtg
ccgatcgacgcgttcgacctggacaagctgccgtcgcacctgcgcgtgacgttcgccgtc
gaatccccggacgggaccgagctgtcgcggggcaaggaccttgacgcgctgcagcacgaa
ctggccgggccggtgcgccaagccgtcgccgacgcggtcgccggcgaactcgaacgcagc
gggctgcgcggctggcccgacgacctcgacgagctgccccgcaccgttgagcgcgacacc
gtgcgcggctatccggcgctggtggacgcgggcgtggccgtcgacgtgcacgtgttcgca
tcaccggccgagcagaacagcgcgatggggcctggcacccgccgactgctgcggctggcc
gtaccgtccccggtcaaaacactggagcgccaactcgatccgcgcacccgcctggtgctg
ggcgccaaccccgacggttcgctgcaggccctgctcgaggactgcaccgacgccgcgatc
gacgtgttgacgcccgcaccggcgtggacgcgcgccgagttcgccgccctgcgggaccgc
gtcaccgccaacctcgaacgcaccaccggcgacattgtcgcccgggtgcaaaaggtgctc
gccgccgcacacgacgtccagctcgccatacccgctgagcccggtcccgcgcaggccgat
gcgatcgccgacatccgcgcacagctcgacgcgctgctgcccgaccggttcgtcaccgcc
accggcgcggcgcatctggccgatctgacccgctatctcaccgcgatcggcagacgcctg
gaccggctgccgcacgccgtcggcgccgaccgggagcggatgcagcgggtgcacgccgtg
cgggacgcctacgacgacctcgtcgccgcgttgtcaccgacgcgcgcggccgccgacgac
gtccgcgacatcgccaggcagatccaggaactgcgggtgagcctgtgggcgcagcaactc
ggcacgccgcgcccggtgagcgagcagcgcatctaccgggcgatcgacgcggtactgccg
tga
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