Mycolicibacterium holsaticum: K3U96_05425
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Entry
K3U96_05425 CDS
T07607
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhol
Mycolicibacterium holsaticum
Pathway
mhol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3U96_05425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhol03400
]
K3U96_05425 (mfd)
Enzymes [BR:
mhol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3U96_05425 (mfd)
DNA repair and recombination proteins [BR:
mhol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3U96_05425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QZA13599
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All DBs
Position
1107007..1110690
Genome browser
AA seq
1227 aa
AA seq
DB search
MTVSGNTHVQTPIAGLVELALRDPSLKEVARRAADEPADLTLIGPASARLFVACALAQAG
PLLVVTATGREADDLTAELRGVYGEQVALFPSWETLPHERLSPGVDTVGARLMVLHRLKH
PDDARLGPPLRVVVTTARSLLQPMAQRPGDLDEWTPVTLTVGEEPRFDAGAAPAATFDAV
LARLVELAYERVDMVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFAVADQR
SIPEISIDTVIAVPCRELLLSDDVRDRAAALAAEHPVAENHLTGSVPEMLARLADGIPVD
GMEALLPLLRKDDLVTLPAHLPPNTPLLICDPEKVRTRAADLMKTGREFLEASWSAAAFG
GSEGTAPIDLEALGASGFVGIDDARAAAAAGGHPWWTLSQLSDETALEVDIRPAPSARGS
QASISEVFAMLRAHVATGGYAAVVTPGTGTAHRVVEQLAESETPAALLEAGATPKEGVVG
VLKGPLHDGVVVPGANLVVITEADLTGSRVATTEGKRLAAKRRNVVDPLALTAGDLVVHD
QHGIGRFLEMTERVVGGARREYLVLEYASNKRGQASDKLYVPMDSLDQLSRYVGGEAPTL
SRLGGSDWTNTKSRARSAVREIAQELVALYAKRQAAPGHAFAPDSPWQAEMEDAFGFTET
VDQLTAITEVKADMERPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGRQVAVLVPTTLLA
DQHLQTFTDRMAGFPVTVKGLSRFTSSAESKAVLDGMKDGSIDIVIGTHRLLQTGVTWKN
LGLVVVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEE
RYPVLTYVGPHDDKQIAAALRRELLRDGQAFYIHNRVRTIDQAAARVQALVPEARVVVAH
GQMPEELLERTVEGFWNRDYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGR
VGRSRERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVE
QSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVAAPEEQKDVRIDLPVDAHLPQDYIGSD
RLRLEGYRRLAAAGDSAAVDAVVEEWIDRYGPLPAPVQRLVAIARLRLLLRHYAITEVSS
VSETTLRLAPLQLLDSQQLRLKRIQPSARYRATTSTVQVPIPRAGEGVGAPRIRDLELVQ
FVADLVLALDGKPQGSVDVTANLEVSV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtatcggggaacacccatgtccaaaccccgatcgcggggcttgtcgagctggcg
ctacgcgacccgtcgctgaaggaagtcgcccgccgcgccgccgatgaacccgccgatctc
acgctcatcggcccggccagcgcccggctgttcgtcgcgtgcgcgctggcgcaggccggc
ccgctgctcgtggtcaccgcgacgggtcgagaagccgacgacctgaccgccgaactgcgc
ggcgtctacggcgagcaggtcgcgttgttcccgtcgtgggagaccctgccccacgagcgg
ctgtccccgggggtcgacacggtcggggcccggctgatggtgctgcaccggctcaagcac
cccgacgacgcgcgcctgggcccgccgctgcgcgtcgtggtcaccacggcgcgctcgctg
ctgcagccgatggcgcaacgaccgggcgacctagacgagtggacaccggtgacgctgacc
gtgggggaagagccccggttcgacgccggagccgccccggcggcgacattcgacgccgtg
ctcgcccgcctggtggagctggcctacgaacgggtcgacatggtcggcaagcgcggcgag
ttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgccgaacacccggtgcgt
gtcgagttctggggtgacgaggtctccgagatgcggatgttcgccgtcgccgaccagcgg
tcgatccccgagatcagcatcgacaccgtgatcgcggtgccgtgtcgcgaactactgctc
agcgacgacgtccgcgaccgcgccgccgcgctggccgccgagcatcccgtcgcagagaac
cacctgaccggcagcgtgcccgaaatgctggccaggctcgccgacggcatcccggtcgac
ggtatggaagcgctgctgccgttgctacgcaaggacgacctcgtcacgctgcccgcgcat
ctgccgccgaacaccccgctgctgatctgcgaccccgaaaaggtgcgcacccgcgccgcc
gacctgatgaagaccggacgtgagtttctcgaggcgtcgtggtcggctgcagcgttcggt
ggctccgaaggcacagcgccgatcgacctggaggccctcggcgcctcgggcttcgtcggc
atcgacgacgcccgcgccgccgccgcggcgggcgggcacccgtggtggacgctgagccag
ctgtcggacgagaccgcgctcgaagtcgacatccggcccgccccgtcggcgcgcggttca
caagccagcatcagcgaggtcttcgcgatgctgcgcgcgcacgtggcgaccggaggatat
gcggcggtcgtgacaccgggcacgggcaccgcgcaccgcgtcgtcgagcagctcgccgaa
tctgaaacgcccgcagcgcttctggaagccggtgccacgccgaaggagggcgtcgtcggc
gtgctgaagggtccgctgcacgacggggtggtcgtgccgggcgccaacctggtggtcatc
accgaggccgacctgaccggcagccgggtcgcgacgaccgaaggcaaacggctggccgcc
aagcgccgcaacgtggtggacccgctggcgttgacggccggcgacctggtggtgcacgac
cagcacggcatcggccggttcctggagatgaccgaacgcgtggtcggcggcgcccgccgc
gaatacctggtactggagtacgcatcgaataagcgcgggcaagcgtccgacaagctctac
gtgccgatggactcgctggatcagctgtcgcgctacgtcggcggtgaggccccgacgctg
agccggctgggcggcagcgactggaccaacacgaaaagccgcgcgcgcagtgctgtcagg
gagatcgcccaggagttggtggcgctctacgcgaagcggcaggccgcacccggacacgcg
tttgcgcccgacagcccgtggcaggccgagatggaggacgcgttcgggttcaccgagacc
gtcgaccagctgaccgcgatcaccgaggtcaaggccgatatggaacggccgatcccgatg
gaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcg
ttcaaggccgtgcaggacggcagacaggtcgcggtgctggtgccgacgacgctgctggcc
gaccagcacctgcagacgttcaccgaccggatggccgggttcccggtcaccgtcaagggg
ttgtcgcggttcacctcgagcgcggagtccaaagcggtgctcgacgggatgaaagacggc
agcatcgacatcgtcatcggcacccaccggctgctgcagaccggtgtgacgtggaagaac
ctgggcctggtcgtggtcgacgaggaacagcggttcggtgtcgaacacaaggagcacatc
aagtcgatgcgcacccacgtcgatgtgctgaccatgagcgcgaccccgattccgcgcacg
ctggagatgagcctggccgggatccgggaaatgtcgacgatcctcaccccgcccgaggag
cgttatccggtgctgacctacgtcggcccgcacgacgacaagcagatcgccgcggcgctg
cgacgcgaactgctgcgcgacgggcaggcgttctacatccacaaccgggtccgcacgatc
gaccaggcggcggcccgggtgcaggccctggtgccggaggcgcgcgtcgtcgtcgcgcac
ggccagatgcccgaggaacttctcgaacgcaccgtcgagggcttctggaaccgcgattac
gacatcctggtgtgcacgacgatcgtggagacgggcctggacatctccaacgccaacacg
ctgatcgtcgagcgcgccgacacgttcgggctctcgcagttgcaccagttgcggggccgg
gtgggtcgcagccgcgagcgtggctacgcgtatttcctgtatccgccggaggttccgctg
accgagaccgcctatgaccggctggccaccatcgcgcagaacaacgagttgggcgccggc
atggccgtggcgatgaaggacctggagatccgcggcgccggcaacgtgctgggtgtcgag
cagtcgggtcacgtcgcgggcgtcggcttcgacctgtacgtgcgactggtcggcgaggcc
gtcgaagcctaccgggcggccgcggacgggaaaaccgttgcggcaccggaagagcagaag
gatgtgcgcatcgacctacccgtcgacgcgcacctgccgcaggactacatcggcagcgac
cgcctgcgtctggagggctaccggcggctcgcggcggccggcgactccgcggccgtggac
gccgtcgtggaggagtggatcgatcggtacgggccgctgccggcgcccgtgcagcggttg
gtcgcgatcgcgcggttgcggttgctgctccggcactacgcgatcaccgaggtcagctcg
gtatcggagaccacgctgcggctggcgcccctgcagctgctggactcacagcagcttcgg
ctcaagcggatacaacccagcgcgcgttaccgggcgacgacgtcgaccgtgcaggtgccg
attccgcgcgccggtgagggtgtcggtgcgccgcgaatccgtgatcttgaactggtgcag
ttcgtcgccgacctggtgctggccctggacggcaaacctcagggcagcgtcgatgtgacc
gcgaacctcgaagtttcggtttaa
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