Mycolicibacterium holsaticum: K3U96_13965
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Entry
K3U96_13965 CDS
T07607
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mhol
Mycolicibacterium holsaticum
Pathway
mhol03030
DNA replication
mhol03430
Mismatch repair
mhol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mhol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3U96_13965 (dnaE)
03430 Mismatch repair
K3U96_13965 (dnaE)
03440 Homologous recombination
K3U96_13965 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhol03032
]
K3U96_13965 (dnaE)
03400 DNA repair and recombination proteins [BR:
mhol03400
]
K3U96_13965 (dnaE)
Enzymes [BR:
mhol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K3U96_13965 (dnaE)
DNA replication proteins [BR:
mhol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K3U96_13965 (dnaE)
DNA repair and recombination proteins [BR:
mhol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K3U96_13965 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QZA10408
LinkDB
All DBs
Position
complement(2891342..2894884)
Genome browser
AA seq
1180 aa
AA seq
DB search
MSGSYSRSFVHLHNHTEYSMLDGAAKITPMLTEAQRLEMPAVGMTDHGNMFGASEFYNKA
TEVGIKPIIGVEAYIAPASRFETKRVLWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNL
FKLSSLASFEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHQREALEAAAK
WREIFGPDNFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDAAQNHEAL
LCIQTGKTLSDPNRFKFDGDGYFLKSAAEMRALWDDQIPGACDATLLIAERVSSYAEVWE
QRDRMPTFPVPEGHDQASWLRREVDAGLARRFPAGVSQEYVDRAAYEIDVICAKGYPSYF
LIVADLINYARSVDIRVGPGRGSAAGSLVAYALRITDIDPIEHGLLFERFLNPERASMPD
IDIDFDDRRRGEMVRYAAERWGNDRVAQVITFGTIKTKAALKDAARVHYGQPGFAIADRI
TKALPPPIMAKDIPVAGITDPNHERYKEAAEVRNLIDTDPDVRTIYETARGLEGLVRNAG
VHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEEIGLLKMDFLGLRNLTIIGDAL
ENIRANRGIDLNLDTVAMDDPATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDIVA
VLALYRPGPMGMNAHNDYADRKNGRQGIKPIHPELEDALRDILAETYGLIVYQEQIMRIA
QKVAGYSLARADILRKAMGKKKREVLDKEYEGFSDGMKANGFSAAAIKALWDTVLPFADY
AFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLGITVLPP
DVNESAVNFASVGEDIRYGLGAVRNVGANVVASLINTRTAKGKYIDFSDYLNKIEIAACN
KKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGADTATDAVF
TIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGIAHLLTAQVDTQIPAILDGDVANDTQV
RVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFPQTYSTFGAEIADDAVVLVGAKV
AIRDDRISLIANELVVPDFSNAVLDRPLAVSLPTRQCTVDKVSALKQVLARHPGTSQVHL
RLISGERITTLELDSSLRVTPSSALMGDLKALLGPGCLGG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagcggttcgtattcgcggtccttcgtccacctccacaaccacaccgagtactcgatg
ctggacggcgccgcgaagatcaccccgatgctgaccgaggcgcagcggctggagatgccc
gcggtcggcatgaccgatcacggaaacatgttcggcgccagcgagttctacaacaaggcg
accgaggtcggcatcaagccgatcatcggcgtggaggcctatatcgcgccggcgtcgagg
ttcgagacgaaacgcgtgctgtggggcgatccgagccagaagagcgacgacgtgtcgggc
agcgggtcctacacccacatgacgatggtcgccgagaacgcgaccgggctgcgcaacctg
ttcaagctgtcgtcgctggcgtcgttcgagggccagttgggcaagtggtcgcggatggac
gccgagatcatcgccgaacatgccgagggcatcatcgccaccaccgggtgcccgtccggg
gaggtgcagacgcggctgcggctgggccatcagcgggaggcgctcgaggccgccgccaaa
tggcgggagatcttcgggccggacaatttcttcctcgagctgatggaccacggcctggac
atcgagcggcgcgtgcgcgagggcctgctggagatcgggcaaaagctcggtattccgccg
ctggccaccaacgactgccactacgtgacgcgcgacgccgcccagaaccacgaggcgctg
ttgtgcatccagaccggaaagacgctgtcggatcccaaccggttcaagttcgacggtgac
ggatatttcctgaagtccgccgccgagatgcgcgccctgtgggatgaccagatcccgggg
gcctgcgatgccacgctgctgatcgccgagcgggtgtcgtcgtacgccgaggtatgggaa
cagcgcgaccggatgccgaccttcccggtgccggagggccacgaccaggcgtcctggctg
cgccgcgaggtcgacgccgggctggcgcgacgcttcccggccggtgtgtcgcaggagtac
gtcgaccgggcggcctacgaaatcgacgtcatctgcgccaagggctacccgtcgtacttc
ctgatcgtggccgacctgatcaactacgcgcgctcggtggacatccgcgtcgggccgggc
cgcggttcggcggccgggtcgctggtcgcttacgcgttgcggatcaccgacatcgacccg
atcgaacacgggttgctgttcgagcggttcctcaaccccgaacgcgcgtcgatgcccgac
atcgacatcgacttcgacgaccgccgccgcggtgagatggtgcgctacgccgccgagcgg
tggggcaacgaccgtgtcgcgcaggtcatcacgttcggcaccatcaagaccaaggccgcg
ctcaaggacgcggcccgggtgcactacgggcagcccgggttcgccatcgccgaccggatc
accaaggcgttgccgccgccgatcatggccaaggacatcccggtcgccggcatcaccgac
cccaaccatgagcggtacaaggaggccgccgaggtccgcaacctgatcgacaccgacccc
gacgtgcgcaccatctacgaaaccgcgcgcggtctcgagggtttggtccgtaacgccgga
gtgcacgcctgcgcggtgatcatgagctccgaaccgctgatcgacgcgatcccgctgtgg
aaacggccacaggacggcgccgtcatcaccggctgggactatccgtcctgcgaagaaatc
ggcctgctgaagatggacttcctgggcctgcgcaacctgacgatcatcggcgacgcgctg
gagaacatccgggccaaccgcggtatcgatctgaacctggacaccgtcgcgatggacgac
ccggcgacctacgaactgctgggccgcggcgacaccttgggcgtgttccagctcgacggc
gggccgatgcgcgacctgctgcgccggatgcaacccaccgggttcgaggacatcgtcgcg
gtgctggcgctgtaccggcccggcccgatgggcatgaacgcccacaacgactacgccgac
cgcaagaacgggcgtcaggggatcaaaccgatccaccccgaattggaggacgctctccga
gacattcttgccgagacctacggcctgatcgtctaccaagagcagatcatgcgcatcgcg
cagaaagtggccggctactcgctggcccgagccgacattctgcgcaaggcgatgggcaag
aagaagcgcgaggtgctcgacaaggagtacgaaggcttttccgacgggatgaaggccaac
ggcttctccgccgccgcgatcaaggcgctgtgggacaccgtgctgccgttcgccgactac
gcgttcaacaagtcacacgccgccggctacgggctggtgtcctactggaccgcctacctc
aaggccaactatccggccgagtacatggccgggctgctgacgtcggtgggcgacgacaag
gacaaggcggccgtctacctctcggactgccgcaggctcggcatcacggtgctgcccccg
gacgtcaacgagtccgcggtgaacttcgcatccgtgggcgaggacatccgctacggactg
ggcgcggtgcgcaacgtcggcgcgaacgtcgttgcctccctgatcaatacgcgcaccgcc
aagggcaagtacatcgacttctccgactacctgaacaagatcgagatcgcggcctgcaac
aagaaggtcaccgagtcgctgatcaaggcgggcgcgttcgactcgctggggcatccgcgc
aagggcttgttcctggtgcacaccgacgccgtcgattcggtgctcggcaccaagaaggcc
gaggcgatgggccagttcgacctgttcggcggcgccgacaccgccaccgacgcggtcttc
acgatcaaggtgcccgacgaggagtgggaggacaagcacaagctcgccctcgaacgcgag
atgctgggcctgtacgtgtcgggccacccgctcaacggcattgcgcacctgctgaccgcg
caggtcgacacgcagatccccgcgatcctcgacggtgacgtcgccaacgacacccaggtg
cgcgtcggcggcatcctcgcctcggtgaaccggcgggtgaacaagaacgggttaccgtgg
gcctcagcgcaattggaggacctgaccggcggcatcgaggtgttgttcttcccgcagacg
tactccacgttcggcgcggagatcgccgatgacgccgtcgtgctggtcggggcgaaggtg
gccatccgcgacgaccggatctcgctgatcgccaacgagttggtggtgccggacttctcc
aacgccgtgctggaccggccgctggcggtcagcctgccgacgcggcagtgcaccgtcgac
aaggtcagcgcgctcaaacaggtgctggcccgccacccgggcacctcgcaagttcatctg
cggctgatcagcggcgagcgcatcaccacgctggaactggattcgtcgctgcgggtgacg
ccgtcgtcggcgttgatgggcgacctcaaggcgctgctcggccccggctgcctgggcggc
tga
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