Mycolicibacterium holsaticum: K3U96_21415
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Entry
K3U96_21415 CDS
T07607
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhol
Mycolicibacterium holsaticum
Pathway
mhol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K3U96_21415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhol03021
]
K3U96_21415
03400 DNA repair and recombination proteins [BR:
mhol03400
]
K3U96_21415
Enzymes [BR:
mhol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K3U96_21415
Transcription machinery [BR:
mhol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K3U96_21415
DNA repair and recombination proteins [BR:
mhol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K3U96_21415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
MepB-like
Motif
Other DBs
NCBI-ProteinID:
QZA11723
LinkDB
All DBs
Position
complement(4440113..4444075)
Genome browser
AA seq
1320 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITEVDNEMRHNELSTLEAEMAVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLEEIWNTFTKLAPKQLIVDEVL
YRELQDRYGEYFVGAMGAEAIKRLIENFDIEAEADSLRDTIRNGKGQKKLRALKRLKVVA
AFQQSSNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLIDGEAGEYT
PAAKDQPESGVYSSPAEAIMAMDRGALSVRAKIRVRLTQLRPPADIEAELFENGWKPGDA
WTAETTLGRVIFNELLPVQYPFVNEQMHKKVQARIVNDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPEKQEILERYEKEADSIEKQYQRGKLNHEERNGELVKIWQTA
TEEVGEALRSHYPSDNPIILIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVTL
AEPQGSGKDAALVRDQHIETSAYARTLATDAVDAKGNVVVERGHDLGDPAIEALLAAGIT
EVKVRSVLTCATGTGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQG
GVTGGSDITGGLPRVQELFEARIPRDKAPIADVSGRVQLEEGERFYKITIIPDDGGEEVV
YDKLSRRQRLKVFKHEDGTERLLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVK
EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFESENRRVVAE
GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLMGLKENVIIGK
LIPAGTGINRYRNIQVEPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacgtcaacttcttcgatgaacttcggattggtcttgcgaccgcggaggacatc
cgtaattggtccttcggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
ccagagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatttgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcaccc
gtcacacacatctggtacttcaagggtgtgccgtcgcggctgggctatctgctggacctg
gcgcccaaggatctcgagaagatcatctacttcgcggcctacgtcatcaccgaggtcgac
aacgagatgcgccacaacgagctgtcgacgctggaagccgagatggcggtcgagcgcaaa
gccgttgaggatcagcgggatgccgacctggaggcgcgcgcgcagaagctcgaggccgac
ctggccgagctggaggccgaaggcgccaagtccgatgtgcgccgcaaggtgcgcgacggc
ggcgagcgtgagatgcgccagctccgcgaccgcgcccagcgtgagctggaccggctcgag
gagatctggaacaccttcaccaagctggctcccaagcagctgatcgtggacgaggtgctc
taccgcgagctgcaggaccgctacggcgagtacttcgtcggcgccatgggcgcggaggcc
atcaagcggctgatcgagaacttcgacatcgaagccgaggccgattcgctgcgcgacacc
atccgtaacggcaaggggcagaagaagcttcgtgcgctcaagcggctcaaggtggtggct
gcattccagcagtcgtcgaactcaccgatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggttcagctcgacggtggccgctttgcgacctccgacctg
aacgacctgtaccggcgcgtgatcaaccgcaacaaccggctcaagaggttaattgacctc
ggagctcctgaaatcattgtcaacaacgagaagcggatgcttcaggagtcggtggacgcg
ctgttcgacaacggtcgtcgcggccgtccggtgaccggaccgggcaaccgcccgctgaag
tcgctgtcggatctgttgaagggcaagcagggtcggttccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgtcagcgt
ccccaggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcaccgacgctgcaccgcctcggtatccaggccttcgagccgcagctggtggagggcaag
gccattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtccgcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcttgtcgcctgcgtcgggtcgtccgctggccatgccgcgtctggac
atggtgaccgggttgtactacctgaccaccctgatcgacggcgaggcaggcgaatacacg
ccggccgccaaggatcagccggagtcgggtgtgtacagctcgcccgccgaggccatcatg
gcgatggaccgcggtgcgctttcggtgcgcgccaagattcgggtgcggctgacgcagctg
cgtccgcccgccgatatcgaggcggagctgttcgagaacggctggaagcccggcgatgcc
tggacggccgagacgacgctgggccgggtgatattcaacgagcttctgccggttcagtat
ccgttcgtcaacgagcagatgcacaagaaggtgcaggcgcgcatcgtcaacgatctggcc
gagcggtacccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacccgttcgggtgtcaccgtgtcgatggccgacgtgctggtgccgccggag
aagcaggaaatcctggagcgctacgagaaggaagccgactcgatcgaaaagcagtaccag
cgcggcaagctcaaccacgaggagcgcaacggcgagctggtcaagatctggcagacggcc
accgaagaggtgggcgaggcgctgcgcagccactacccgtcggacaacccgatcatcctg
atcgtcgactccggcgccacgggtaacttcacgcagacccgcacgctggccggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggtctgacggtgctggagtacttcatcaacacccacggcgcccgaaagggtctggcg
gacaccgctcttcgtaccgcggactcgggttacctgactcgtcgtctggtcgacgtcagc
caggacgtcatcgtgcgtgagaccgactgcgaaaccgagcggggcatcaccgtcacgctc
gccgagccacagggaagtggcaaggacgcggcgttggtgcgcgatcagcacatcgagacg
tcggcctacgcacgcacgttggcgaccgacgccgtcgacgccaagggcaacgtggtcgtc
gagcgcggtcacgacctgggcgacccggcgatcgaggctctgctggccgcggggatcacc
gaggtgaaggtccgctccgtgctgacctgcgccaccggcaccggcgtgtgcgccaagtgc
tacggccgttcgatggcgacgggcaagctcgtcgacatcggcgaggcggtcggcatcgtc
gccgcgcagtccatcggcgagcccggcacgcagttgaccatgcgtacgttccaccagggc
ggcgtcaccggcggtagcgatatcaccggtggtctgcctcgcgtgcaggagctgttcgag
gcgcgcatcccgcgggacaaggcgccgatcgccgacgtctccggtcgtgtgcagctcgag
gagggcgagcgcttctacaagatcaccatcatccccgacgatggtggcgaagaagtggtg
tacgacaagctctctcgtcgtcagcgcctgaaggtgttcaagcacgaggacggcaccgag
cggttgctcgccgacggcgaccacgtcgaggtgggtcagcagctgatggaaggctccgcc
gacccgcacgaggtgttgcgtgtccagggcccgcgcgaggtgcagatccacctcgtcaag
gaggtccaggaggtctaccgcgctcagggtgtgtcgatccacgacaagcacatcgaggtg
atcgtccggcagatgctgcggcgcgtcacgatcatcgattcgggtgcgacggagttcctg
cccggttcgctcaccgagcggtccgagttcgagtccgagaaccgtcgggtggtcgccgag
ggcggcgagcccgcggccgggcgtccggtgctgatgggtatcaccaaggcgtcgctggcc
accgattcgtggctgagcgcggcgtcgttccaggagaccactcgcgtgctgaccgatgcg
gcgatcaactgccgcagcgacaagctgatgggtctgaaggagaacgtgatcatcggcaag
ctgatcccggccggtacgggtatcaaccgctaccgcaacatccaggtggagcccaccgaa
gaggcccgtgccgctgcgtacacgatcccgtcctacgaggatcagtactacagcccggac
ttcggccaggccaccggtgcggcggtgccgttggacgactacggctacagcgactaccgc
tag
DBGET
integrated database retrieval system
