Mycolicibacterium holsaticum: K3U96_22055
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Entry
K3U96_22055 CDS
T07607
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mhol
Mycolicibacterium holsaticum
Pathway
mhol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mhol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K3U96_22055 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhol03400
]
K3U96_22055 (recD)
Enzymes [BR:
mhol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K3U96_22055 (recD)
DNA repair and recombination proteins [BR:
mhol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K3U96_22055 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
UvrD-helicase
RecD_N
SH3_13
PhoH
AAA_5
nSTAND3
T2SSE
AAA_16
AAA_28
AAA_29
TraI_hel_assoc_N
CbiA
Mg_chelatase
Herpes_Helicase
AAA_25
AAA_7
SRP54
AAA
DO-GTPase1
MukB
NTPase_1
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QZA11828
LinkDB
All DBs
Position
4588450..4590108
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AA seq
552 aa
AA seq
DB search
MTSVTWRRAIGATGLLSTFTDAELIESADVHVAQRLTTLAEEPDEQVALAIALLVRALRG
GSVCLDLASAEAQVEVKGLGDAVRASTLIGEALRVDGDLLYLDRYWREEQQVCDDILAML
SAQPASASADVDRLFPAGFEEQRAAAEVALSQGLTVLTGGPGTGKTTTVARLLALLAGGS
KLRIALAAPTGKAAARLQEAVQMEVDKLSAVDRAALAGLQATTLHRLLGSRPDTSARFRH
NRANRLPHEVIVVDETSMVSLTMMARLLEAVRPDARLILVGDPDQLASVEAGAVLADLVD
GLGGSRIAELKTSHRFGESIGALAAAIRTGDADAAVDVLRAGDDHIEWADTSDPAEHLRK
VMVPWAVALRQAAILGDDNAALATLTEHRLLCAHRRGPYGVRYWNHQVERWLAERTGEPI
WSDWYAGRPVLVTANDYGLGLYNGDTGVTVHRDGVLRAVIAGTSRIEFATSRLADVDTMH
AMTIHKSQGSQADEVTVLLPPEDSRLLTRELFYTAVTRAKSRVRVIGPEASVRAAIERRA
VRASGLAQRLAG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgtgacatggcgacgggcgatcggcgcgaccggtctgctgagcacgttcacc
gacgccgagctgatcgagtccgcggatgtgcatgtggcacaacggctgacgacgctggcc
gaagaacccgacgagcaggtggcgttggcgatcgcgctgctggtgcgcgcgctgcggggc
ggatcggtatgcctggacctggcgtcggcggaagcgcaggtcgaggtgaagggcctcggt
gacgcggtgcgggccagcacgctgatcggagaggcgctgcgcgtcgacggcgatctgctc
tacctcgacaggtactggcgtgaggagcagcaggtctgcgacgacatcctcgcgatgctg
tccgcccagccggccagcgcgtccgccgacgtcgaccggttgtttccggccgggttcgaa
gaacagcgcgccgctgcggaagtggcgctttcccaagggctgacggtgctgaccggcggt
ccgggtacgggcaagacgacgacggtggcgcggctgttggcactgctggccggcggcagc
aagttacggatcgcgttggcggcgccgacgggtaaggccgccgcgcggttgcaggaagcc
gtgcagatggaggtcgacaagctgtcggcggtcgaccgcgccgcgctggcaggcctgcag
gcgaccacgctgcaccggctgctgggcagccgaccggacacgtcggcccggttccggcac
aatcgcgcaaatcggttgccgcacgaggtgatcgtcgtcgacgagacgtcgatggtgtca
ttgacgatgatggcgcggctgctggaggcggtgcgcccggacgcgcggttgatcctggtc
ggggatccggaccagttggcgtcggtggaggccggcgcggtgctggccgacctggtcgac
gggctgggcgggtcgcggatcgcagaactgaagacctcacaccggttcggcgaatcgatc
ggggcgctggcggcggcgatccggaccggtgacgcggacgccgccgtcgacgtgctgcgc
gccggtgacgaccatatcgagtgggccgacacctcagaccccgcggagcatctgcgaaaa
gtgatggtgccgtgggcggttgcgcttcgccaggccgcgatactcggcgacgacaacgcc
gcgctggcgacgttgaccgagcaccggttgttgtgcgcgcaccggcgcggcccgtacggc
gtgcggtactggaaccatcaggtcgagcggtggctggctgagcgcaccggtgagccgatc
tggtcggactggtatgccggtcggccggtgctggtgacggccaacgactatgggcttggc
ctctacaacggcgacaccggtgtcacggtgcaccgcgacggggtgttgcgcgcggtgatc
gcgggcacctcgcggatcgagttcgcgaccagtcggctggccgacgtcgacaccatgcat
gcgatgacgatccacaagtcacagggcagccaggccgacgaggtcacggtgctgttgccg
cccgaagactcgcggctgctgacccgcgagctgttctacacggcggtgacacgggccaag
tcgcgggtgcgggtgatcgggccggaggcctcggtgcgggcggcgatcgagcgccgggcc
gtccgagcgtcgggcctggcgcaacggctggcggggtga
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