Methanosarcina horonobensis: MSHOH_0016
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Entry
MSHOH_0016 CDS
T03933
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mhor
Methanosarcina horonobensis
Pathway
mhor03030
DNA replication
mhor03420
Nucleotide excision repair
mhor03430
Mismatch repair
mhor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mhor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSHOH_0016
03420 Nucleotide excision repair
MSHOH_0016
03430 Mismatch repair
MSHOH_0016
03440 Homologous recombination
MSHOH_0016
03460 Fanconi anemia pathway
MSHOH_0016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mhor03000
]
MSHOH_0016
03032 DNA replication proteins [BR:
mhor03032
]
MSHOH_0016
03400 DNA repair and recombination proteins [BR:
mhor03400
]
MSHOH_0016
Transcription factors [BR:
mhor03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSHOH_0016
DNA replication proteins [BR:
mhor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSHOH_0016
DNA repair and recombination proteins [BR:
mhor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSHOH_0016
MMR (mismatch excision repair)
MSHOH_0016
DSBR (double strand breaks repair)
HR (homologous recombination)
MSHOH_0016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
TriTu
POT1PC
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AKB76499
UniProt:
A0A0E3S5Q4
LinkDB
All DBs
Position
complement(19841..21295)
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIESIYKKLSHVISREDFLQRTQEKVENMGGLCDEAMAAMLVANELGFSDAGRDSIKI
ENITPESGPVNFIARIISVFDIKEFTRNDGTIGRVGNLIVGDETGKVKLTLWDNMADLIK
TGKVKVGQTVQVSGFAKQGYSGVEVNIGNNGVLTESEEEVDVVSSTQKIKDIKDGMGDLN
LTGKVLEISEVRTFQRKDGNSGRVGNLMLGDETGTLRVTLWDEKTDFLNQIEYGDTVELV
NAYARQNAFTQKIELQIGNRSIIRKSEKKVEYEEEFTPVADIKADMNNINVSGRVLDISE
TRTFEKKDGSAGRVGNILLGDSTGKIRLTLWDEKTDFLEEIDFDETVEVLNAYSRENTFS
QQVELSLGARGIIQKSEKKVEYREKFTDIADIIPGESYSVQGKISEVGELREFEREDGTE
NVVANLQLKDETGSVRLTLWGEQAYVIEDLDIDSEIQIIDAYARYGLNEEIELSVGNRSR
VIIL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatattgaaagtatttataagaagctcagccatgtcataagtagagaggatttc
ctgcagcgtacacaggaaaaggtcgagaacatgggaggactttgtgatgaggctatggct
gccatgctggtcgctaatgaactcggattctcggatgctggcagagacagtataaaaata
gaaaatattaccccagaaagcggacctgttaattttattgcaagaattatttcggttttc
gatattaaagagttcacacggaatgacgggaccataggcagagtaggaaaccttatcgtt
ggagatgagacagggaaagtaaagttaacactctgggacaacatggcagacctgattaaa
accggaaaagtaaaggtaggacaaaccgttcaggttagtggatttgcaaagcagggatac
tccggagtggaagttaacatcggcaacaatggagtcctgaccgaaagtgaagaagaggtt
gatgtggtttcgagcacccagaaaataaaggacataaaagatggcatgggagacctcaac
cttaccggaaaggtacttgaaatttctgaagtcagaaccttccagcgtaaagacggcaat
agtggaagggtgggaaacctgatgctcggagacgagacaggtacactcagagtaaccctt
tgggatgaaaaaactgattttctaaatcaaattgagtatggggatactgttgagctcgtc
aatgcttacgctcggcaaaatgcctttacccagaaaattgaactgcagatagggaatcgg
agcataatcaggaaaagtgaaaagaaagtagaatatgaggaagaattcacccctgttgca
gacataaaagctgacatgaataatattaatgtgtcaggcagagtacttgatatctcagaa
acccggactttcgagaaaaaagatggatctgccggcagagtagggaacattcttcttgga
gattctacgggcaaaataagactgacgctctgggatgaaaagaccgattttcttgaagaa
attgattttgatgagactgttgaagttcttaatgcctattcccgagaaaacactttcagc
cagcaggttgaactcagtcttggagccagaggaataattcaaaaaagcgaaaaaaaggtt
gagtacagagagaaatttactgacatagccgatattatacctggcgagagttattctgta
cagggaaagatttccgaggtcggagaactaagggagtttgaacgagaagacggaaccgaa
aatgtggtcgcaaacctgcagcttaaggacgaaacaggcagcgtccggttgacgctctgg
ggagaacaggcctatgtgatagaagacctggatatcgattccgaaatacagatcattgac
gcatatgccaggtatggactgaacgaagaaattgaactgagtgtcggaaacaggagtaga
gtgattattctctga
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