Methanosarcina horonobensis: MSHOH_0662
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Entry
MSHOH_0662 CDS
T03933
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mhor
Methanosarcina horonobensis
Pathway
mhor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSHOH_0662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhor03019
]
MSHOH_0662
03009 Ribosome biogenesis [BR:
mhor03009
]
MSHOH_0662
Enzymes [BR:
mhor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSHOH_0662
Messenger RNA biogenesis [BR:
mhor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSHOH_0662
Ribosome biogenesis [BR:
mhor03009
]
Prokaryotic type
rRNA helicases
MSHOH_0662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
Omega_Repress
Motif
Other DBs
NCBI-ProteinID:
AKB77145
UniProt:
A0A0E3WT32
LinkDB
All DBs
Position
complement(789698..791455)
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AA seq
585 aa
AA seq
DB search
MEKLAKFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGDKKLHIAPIYGGQSMTQQLRL
LKTGVDIVVGTPGRIIDHLERKSLNLENISYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIVKKHMQNYEHITIEKEELTETLTEQIYFEVKENDKFEALCRIID
IEDEFYGLVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK
KTSKSEMKKGRIPEIKDVIKAKRARVRAELEETIKTEEYGDCLEMSEKLLEEYPAEKILA
ALLKFTFKDKFDESMYTEISSPSSYVDRKGKSRLFIAMGKADGMTPDKLSYFIQEELGDS
ELKVRDAEIFPHFSFVTLPFAQAEALIEIFKNKRRGSKPFVELAQKSRGKSSKDSGETRS
DNRSNSRGNSRGGESRGDSRGESRGTNGTNYTRNTRSTKKRDSSY
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttgggctctcggacagtacattgaaagccctc
aaaaagaaagggttcgaagaaccaaccccgattcaggaaaaggtcattccgctttttttg
aaaggagaatcagacattatagggcaggctcagacaggaacaggaaaaacaaccgccttc
ggagcccccattatagagaaaattcctgagaaatcaggacacgttcaggcaataatcctg
actcctacaagggaacttgcaattcaggtttcagaagagcttaactccataaaaggagac
aaaaagcttcacattgcccctatatacggcgggcagtccatgacccagcagcttcgcttg
ctgaaaaccggcgtggatattgtagttgggactccgggaaggatcatagaccatctcgaa
agaaagagcctcaatctcgaaaatatttcgtatttcgtgcttgacgaagccgacgaaatg
ctgaacatgggctttattgatgatataaaggagatcttaaaggcaacaggtcctgataaa
aggatgcttttcttctcagccacaatgccaaagccgattcttggaattgtcaagaagcat
atgcagaactacgagcatattacgattgagaaagaggaacttacagaaaccctgaccgaa
cagatctattttgaggttaaggaaaatgacaaattcgaagccctctgcaggattatcgat
attgaggacgaattctacgggctcgtattctgccggacaaagaccgacaccagccagctt
gcccagaaactgagcgacaggggttatttagccgatgccctgcatggagacctctcccag
caggaacgcgaaaaaatccttaacaagttcaggaagcagaagataaacattctcgcagcg
accgatgtcgcagcaagaggcatcgacattatggacctgacccatgttattaactattcc
ctgcctcaggaccctgagtcctatgtgcacaggatagggaggacaggaagggcaggtaaa
cagggaactgctattacctttgtcacatccaccgaattcagaaggctcacttatattaaa
aagacctcaaagtccgaaatgaagaaaggccgcattcctgaaataaaagatgtaattaaa
gccaaaagggcgagagtaagagccgaacttgaagagacaataaaaacggaagagtacggg
gactgccttgaaatgagcgaaaagctccttgaagaataccctgcagaaaagattctggct
gccctcttgaagttcaccttcaaagacaagttcgatgaaagcatgtacactgaaatctcc
agccccagctcctatgtcgacagaaaaggtaagtccaggctctttatagctatgggtaaa
gccgatggcatgactccggacaaattgtcatatttcattcaggaagaactcggggacagc
gaactcaaagtaagggatgcagaaattttcccgcatttctcctttgtaactctgccattt
gcccaggctgaagccctgatcgaaatcttcaaaaacaaaagaagaggaagcaaacccttc
gtggaacttgctcagaaatccagaggaaaaagctcaaaggattcaggggagaccagaagc
gataatcgaagcaattccagaggcaattctagaggcggcgaatccagaggggattcaaga
ggcgaatctcgcggcacaaatggcacaaattatacaagaaatactagaagcacgaaaaag
agagactcctcgtattaa
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