KEGG   Methanosarcina horonobensis: MSHOH_2566
Entry
MSHOH_2566        CDS       T03933                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mhor  Methanosarcina horonobensis
Pathway
mhor03030  DNA replication
mhor03410  Base excision repair
mhor03420  Nucleotide excision repair
mhor03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mhor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSHOH_2566
   03410 Base excision repair
    MSHOH_2566
   03420 Nucleotide excision repair
    MSHOH_2566
   03430 Mismatch repair
    MSHOH_2566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mhor03032]
    MSHOH_2566
   03400 DNA repair and recombination proteins [BR:mhor03400]
    MSHOH_2566
Enzymes [BR:mhor01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSHOH_2566
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSHOH_2566
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSHOH_2566
DNA replication proteins [BR:mhor03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSHOH_2566
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSHOH_2566
DNA repair and recombination proteins [BR:mhor03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSHOH_2566
   NER (nucleotide excision repair)
    Other NER factors
     MSHOH_2566
   MMR (mismatch excision repair)
    Other MMR factors
     MSHOH_2566
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Matrix_Filo
Other DBs
NCBI-ProteinID: AKB79049
UniProt: A0A0E3SB80
LinkDB
Position
complement(3137734..3139440)
AA seq 568 aa
MTSFREFAETCQAIEKTSSTIETTNKVADLLKKVDVEELPLATHFIMSEVFPAWSGQQLG
IGTSLLYVSLSKASGMSIHSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFLEEQSELS
ITEVYRRFKTASEASGKGSQDVKVKNLQFLFTSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFLVPAEIVEHSFMVTNDLGIVAAAAKKGGIEALESLGIEINRPIKMMLSQISPD
IDADIRDMKEAAIEWKFDGARVQIHKNGDSVSLFSRKLENVTNSLPDIVEIVRKHIKAES
AILDGEAVAVDEDGKPRAFQEILKRFRRKYDVKEKVLGIPIQLNLFDIMYLNGKTLIDLP
LLERRKALESCVESSVEDSKSICVDKQVITGDLELVEKIYREALKAGHEGVMVKNPTSVY
SPGKRGKNWLKKKPLMDTLDLVIVGAEWGFGRRANLIGSYTVACYDPETSRFLQVGKVGT
GLTDEQLKELTEILSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFSLRFPRFI
RIRDDKDPEEADTIQRIGRVYSQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcggaaacatgccaggcaattgaaaaaacatcgagcact
atagaaaccacaaataaggttgctgaccttctcaaaaaggttgacgttgaagagctgcct
cttgccactcattttattatgagtgaggtttttcctgcctggagtggacagcaacttggg
attggcacaagcctgctttatgtttctctttcaaaagcttcaggcatgtctatacatagt
atagagtccctcattcgaaccaccggagacatcggggatacggcgctccttattctgaaa
gagaaaaggaagaatcaggtgacattttcttcttttcttgaggaacagtccgagctctca
ataacagaggtttacaggcgtttcaagacagcatccgaggcttcgggaaaaggttcgcag
gatgtcaaggtcaaaaacctccagtttctgtttacttcatcaaccccgagggaagccaaa
tatatttccaggcttgcactcgaagaactccgaattggtgtaggggaaggagttgtcagg
gacgctattgcaaaggcctttttagtccctgcagagattgtggaacattccttcatggtt
acaaatgatcttgggatagtagctgcggctgctaaaaaaggcgggatagaagctctcgag
agtctcggaatcgaaattaaccgcccgatcaagatgatgctttcgcagatcagccctgat
atagatgctgatatcagggacatgaaggaggctgcaattgagtggaaattcgatggggca
agagtccagatccacaagaacggagattcggtttctcttttttcacgaaagctcgaaaac
gttactaattcccttcctgacatcgttgaaatagtccgtaagcatataaaggctgaatct
gcaattcttgatggagaagctgtggctgtagacgaagatggaaagccgagggcatttcag
gaaattcttaagcgtttcaggcgcaagtacgatgtcaaggaaaaagtactcggaattccc
atccagctcaacctttttgacataatgtatctcaacggtaaaacactgatagatctcccc
cttcttgaacgaagaaaggcacttgagtcgtgtgtggagagctctgttgaggattcaaag
tcaatttgcgtggataagcaggtgataaccggagatcttgagcttgtggaaaagatctac
agggaagcattaaaggcaggacacgaaggagttatggtcaaaaacccgacttccgtttat
tctcctggcaagcgaggcaaaaattggctcaagaaaaaaccccttatggatacccttgac
cttgtaattgtaggggccgaatggggattcgggcgcagggcaaaccttataggttcttat
actgttgcctgctatgaccctgagacttctcgcttcctgcaggtaggtaaggtcggcaca
gggcttactgatgaacagcttaaggaacttacagaaatactctcagggttaatggaaggc
ggagaagccggaggagtatttgccataaggccaaaagttgttcttgaaatcgcttttgaa
gaaatccagaaaagtcccaactacgactcgggtttttccctgcgttttccccgtttcatc
cgcatccgggatgataaagatcccgaagaagcagacacgatacagaggattgggcgcgta
tacagtcagcagctgaaaaggctgtaa

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