Methanosarcina horonobensis: MSHOH_3588
Help
Entry
MSHOH_3588 CDS
T03933
Name
(GenBank) Heat shock protein 60 family chaperone GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
mhor
Methanosarcina horonobensis
Pathway
mhor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSHOH_3588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhor03019
]
MSHOH_3588
03110 Chaperones and folding catalysts [BR:
mhor03110
]
MSHOH_3588
03029 Mitochondrial biogenesis [BR:
mhor03029
]
MSHOH_3588
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mhor04147
]
MSHOH_3588
Enzymes [BR:
mhor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
MSHOH_3588
Messenger RNA biogenesis [BR:
mhor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
MSHOH_3588
Chaperones and folding catalysts [BR:
mhor03110
]
Heat shock proteins
HSP60 / Chaperonin
MSHOH_3588
Mitochondrial biogenesis [BR:
mhor03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
MSHOH_3588
Exosome [BR:
mhor04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
MSHOH_3588
Exosomal proteins of other body fluids (saliva and urine)
MSHOH_3588
Exosomal proteins of breast cancer cells
MSHOH_3588
Exosomal proteins of colorectal cancer cells
MSHOH_3588
Exosomal proteins of bladder cancer cells
MSHOH_3588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
GTP-bdg_M
Motif
Other DBs
NCBI-ProteinID:
AKB80071
UniProt:
A0A0E3SFZ8
LinkDB
All DBs
Position
complement(4390940..4392550)
Genome browser
AA seq
536 aa
AA seq
DB search
MASKQIMFDESARKSLLSGVDKVANTVKITLGPKGRYVVLDKSTKPVVTNDGVTIAKEIE
LHDKFENMGAKLVKEVASKTQDNTGDGTTTATLLAQSMIREGLKNISAGANPIEVKKGIE
IATEKVVGYLKGKSVEVKGKDKIIQVATISANNDEEIGNLIADAMERVGYNGVITVEDSK
TMETSLDVVEGMQFDRGFVSPYMALDTEKMICEFEDPYILITDKKINSMKQIVPVLEKVA
SEGRSLLIIAEDVDGDAQAALILNIIRGALRVCAVKAPGFGNERKEMLEDIAVLTGGQVI
SEEKGMKLEEFSDYMLGSARKVTVDNHKTIIVEGRGDKADIDERVRIIEAQVNIAEADYR
KTELKKRQAKLGGGVAVIKVGAATETELKEKKMRIDDALNATKAAVEEGVVTGGGISLFR
AAAVLDSLNLEGDRQVGVKIVQRSIEDPVRQIAANAGREGAEVVATIKAESSEHFGYNAK
RDMFEDLFEAGVIDPTKVVRSGLQNAASIAGMVLTTEALVTDFDEEKDERTAAIII
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaagcagataatgtttgatgagagtgcgagaaaatcactcttaagcggtgtg
gataaagtcgcaaataccgttaagatcaccctgggacccaagggccgttatgtcgttctg
gataaaagtacaaagcctgtggtcacaaatgacggtgtcaccattgcaaaagaaatagag
ctccatgacaagttcgaaaatatgggagccaaactcgtcaaggaggtcgcttccaaaacc
caggataacacgggggacgggacaacaacagctacccttcttgcccagagcatgatccgg
gaaggcctgaaaaacatcagtgccggagcaaaccccatagaagttaagaaagggattgag
attgccacggaaaaagttgtagggtatctcaagggcaagagtgtggaggtaaagggcaag
gataaaatcattcaggtagctactatctctgcaaacaatgacgaagaaataggcaacctg
atcgccgatgctatggaaagggtcggctacaacggagtaatcacagttgaagattcaaag
actatggaaaccagcctcgatgttgttgagggtatgcagttcgaccgcggatttgtttcc
ccttatatggctctcgataccgaaaaaatgatttgtgaatttgaagacccctatatcctg
attactgacaaaaaaattaacagcatgaagcagatagtgcctgtgcttgagaaagtcgct
tctgaaggccgttccctccttattattgctgaagatgttgatggggatgcccaggcagcc
cttattcttaacattattcgcggagccctcagggtctgcgctgtgaaagctcccggattc
ggaaacgagagaaaggagatgcttgaggacattgctgtccttaccggcgggcaggttatc
agtgaagaaaagggcatgaagcttgaagagttcagcgattacatgctaggaagtgccagg
aaagtcacggttgacaatcacaagacaattattgttgagggcaggggcgacaaagcagac
atcgatgaaagagtcaggattatcgaagcccaggtcaatattgccgaagccgattacagg
aagaccgaactcaaaaagcgccaggcaaagcttggaggtggcgttgcggtaatcaaggtg
ggagctgcaaccgaaaccgagctcaaggaaaagaaaatgagaatcgatgatgccctgaac
gcaacaaaagctgcagttgaggaaggggtggttacaggaggaggaataagtctcttccgt
gcagctgcagtccttgattctcttaaccttgaaggcgacagacaggtaggtgtaaagatc
gtccagagatccatagaagaccctgtccgccagattgcagcaaatgcaggcagagaaggc
gctgaagtggtggcaaccataaaggctgaatccagtgaacacttcgggtacaatgcgaaa
agagacatgtttgaagacctcttcgaagcaggagtaatcgacccgacaaaagtggtaagg
agcgggcttcagaacgctgcatcaattgcaggcatggtgctcacaacagaagctctcgta
acagatttcgatgaagagaaggacgaaaggacagctgcaatcattatctga
DBGET
integrated database retrieval system
