Methanosarcina horonobensis: MSHOH_3619
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Entry
MSHOH_3619 CDS
T03933
Name
(GenBank) Transcription initiation factor B
KO
K03124
transcription initiation factor TFIIB
Organism
mhor
Methanosarcina horonobensis
Pathway
mhor03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mhor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSHOH_3619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhor03021
]
MSHOH_3619
Transcription machinery [BR:
mhor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
MSHOH_3619
Prokaryotic type
Archaeal type
TFB
MSHOH_3619
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cas12f1-like_TNB
Sigma70_r4
Zn_ribbon_SprT
Lar_restr_allev
Zn_ribbon_LysW
RPA_interact_C
Trm112p
DUF7577
Zn_ribbon_IS1595
HTH_AsnC-type
BRF2-like_C_cyclin_rpt
HTH_Tnp_ISL3
A2L_zn_ribbon
Zn_ribbon_PaaD
zf-ChsH2
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
AKB80102
UniProt:
A0A0E3SHZ6
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All DBs
Position
complement(4438566..4439579)
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AA seq
337 aa
AA seq
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MVEVERVRYSDTLEREKIRAMIKARKEKQKEQSFETEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagagaaaaaatacgtgcc
atgattaaagctcgcaaagaaaaacaaaaggagcaaagttttgagaccgaaaaggccgtg
tgtccagaatgcggtagcagaaacctagttcacgactatgagagagcggagctcgtgtgt
ggggactgcggacttgtcattgatgccgactttgtggatgaaggaccggaatggcgagct
ttcgatcacgatcagcgtatgaagcgttcccgtgtgggtgcgcccatgacatatacaata
cacgacaaaggtctttccacaatgattgactggagaaaccgtgactcctacggaaagtcc
atatcttccaaaaaccgtgctcaactctatcgtttaagaaaatggcagcgtagaattcgt
gtaagtaacgcaactgaaagaaacctcgcttttgccctttccgaactggacagaatggct
tctgctcttggtcttcccagaactgtcagggaaacagcagcagtcgtctacagaaaagct
gtggacaagaatcttatccgcggaaggagcattgaaggtgtagccgcagcagctctttat
gcagcctgtcgccagtgcagtgtcccgaggacacttgacgagatcgaagaagtttccagg
gtaagcaggaaagaaatcggaaggacttaccgtttcatttctcgagaacttgccttaaag
ctcatgccaacttctccaatcgactatgttccgaggttctgctcagggcttaaccttaaa
ggagaagtccagtcaaagagtgttgaaatcctcaggcaggcttcagaaaaagaactcaca
agcggaagggggccaacaggagttgccgcagctgcaatttacattgcgtccattctctgc
ggagagcgcaggactcagcgtgaagtcgcagatgttgccggagtcacggaagttaccatc
aggaacaggtataaagaacttgcagaagaactggacatagagatcattctctaa
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