Methanosarcina horonobensis: MSHOH_3802
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Entry
MSHOH_3802 CDS
T03933
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mhor
Methanosarcina horonobensis
Pathway
mhor03022
Basal transcription factors
mhor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSHOH_3802
09124 Replication and repair
03420 Nucleotide excision repair
MSHOH_3802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhor03021
]
MSHOH_3802
03036 Chromosome and associated proteins [BR:
mhor03036
]
MSHOH_3802
03400 DNA repair and recombination proteins [BR:
mhor03400
]
MSHOH_3802
Enzymes [BR:
mhor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSHOH_3802
Transcription machinery [BR:
mhor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSHOH_3802
Chromosome and associated proteins [BR:
mhor03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSHOH_3802
DNA repair and recombination proteins [BR:
mhor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSHOH_3802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
PhoH
HBB
HTH_56
nSTAND3
Humanin
TIP49
ATPase
Sigma54_activat
HK
Motif
Other DBs
NCBI-ProteinID:
AKB80285
UniProt:
A0A0E3WUG5
LinkDB
All DBs
Position
complement(4669718..4672072)
Genome browser
AA seq
784 aa
AA seq
DB search
MEQKNGYMRYFTKKSCYPNQAEAMEKIHSALLSEKIVLFEGACGTGKTLSALAPALHVGK
KLNKVVIIVTNVHQQMVQFINEARDINRDNSIKTIVFKGKTSMCPDNLDYEECRLKGENT
YDLLDFEREVSSKEKELKDAYEKHKKTKDPALYTLRNELEKELEEARKKAQSLRNHSCPR
LYEVLRFEGSEFSSWLFSDVKSPEEVMEYAEDRDMCGYELLKKELKNTELLICNFHHVLN
ADIFITLLKWLEKDPEDIILIFDEAHNIEASARSHSSIMLSELTIEKALSEVGEIPEPEN
SPIFGAGSGPGIGIPLDQDYASRLYAKRLFSCLLTSVRETYDSKLKFGERNRLGKHWQDI
QISDPYERLDILKARFLRDAKKEGFADEEKVLTRLREIGEFGGRLEEIYAENYKKGLLSV
PKRSQIRYVADFLSSYLVLSDRQNYYPILNMRRDFKSDRVVGRLELFTCIPKNVTQPLLD
SVYSAVLMSATLRPFEMVKSTLGIAREVEEITYGTTFPQERRLTLAVSVPPLFAKNRDSP
ETLESLKDSLLAATAASPGNVIIYFQSYAEALRYTKLLEPELSVPIFLDEVGVSAQEIRQ
EFFKIGEQGGKAVLITYLWGTLSEGVDFRDSRGRTVIVVGVGYPALNDRIKAVESAYDTV
FGCGEGWEFAVQVPTIRKVRQAMGRVVRSPGDFGVRILLDARYQGSQMRKLGKFSVFGYF
PPEESREFLDVTPREVGSLVEEFFANIVPYESENKETEIKKTGKKEPESPASRRPEFGSL
AEKL
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaagaacggatacatgagatactttacaaaaaagagctgctaccccaaccag
gcagaagctatggagaagattcattctgctctcttgagtgagaaaatagtgctctttgaa
ggggcatgtggcacaggcaagactctgagtgcacttgctcctgcactgcatgtggggaag
aaactcaacaaggtagtaattatagtcacaaatgtccaccagcagatggttcagttcatc
aatgaagccagggatatcaacagggacaacagtataaaaacaattgtttttaagggcaag
acttccatgtgtccagataatctcgactatgaagaatgtcggctcaaaggtgaaaatacc
tacgacctccttgattttgaacgggaagtctcttcaaaggaaaaagaactcaaagacgcc
tatgaaaaacacaaaaaaacaaaagatcctgcgctttataccctcaggaacgagcttgaa
aaagaacttgaagaagccagaaaaaaagctcagtccttgaggaaccactcctgtcccagg
ctttatgaagtcctcaggttcgagggaagtgagttttcttcctggcttttttccgatgta
aagagtcccgaagaagtaatggaatatgcggaagatcgggacatgtgcgggtacgagctt
cttaaaaaggaactcaaaaacacggaactcctgatctgcaacttccatcatgtgttaaac
gctgatattttcataactctccttaaatggcttgaaaaagaccctgaagatattattctt
atctttgacgaagctcacaacattgaggcttcagcccgatcccattcctccataatgctc
tcagagctgaccattgaaaaagccctttccgaagttggggaaattcctgagcctgaaaat
tcccccatattcggagcaggctcaggaccgggtatagggattcctctcgaccaggactat
gcatcccggctctatgccaagaggcttttttcctgcctcctgacctctgtaagggaaacc
tatgactcaaaactgaagttcggggaaaggaacaggcttggaaaacactggcaggatatc
cagatcagcgacccttatgaacgtctcgacatcctgaaggctcgctttttgcgggatgca
aagaaagaagggtttgcagatgaagaaaaagtactgacacggctgcgggagatcggagag
ttcgggggcaggctggaagagatctacgctgaaaattacaaaaaaggtctcctttccgtg
cccaaacgatcccagatccgatatgttgccgattttctttcttcctatcttgtgctttcg
gacaggcagaactattatccgatcctaaacatgcggagggacttcaaaagtgacagggtg
gtcgggaggcttgaacttttcacctgcattcccaagaatgtgacccaacctttgcttgat
tccgtttattcggcagttctgatgtctgccacactccggcctttcgagatggttaaatcc
acacttggtattgcccgggaagtggaagaaataacttatgggaccacttttccacaggaa
agaaggcttactctcgcagtttcagttcctcctctctttgcaaaaaacagggacagccct
gaaactctggaaagtttgaaagactcgcttcttgctgctactgctgcctcacctgggaat
gtaattatttacttccagagctacgccgaagccctccgctatacaaaactccttgagcct
gagctttcggttccgatttttcttgatgaggtaggggtttcagctcaggaaatcaggcaa
gagtttttcaaaataggggaacagggaggaaaggctgtactcatcacctatctatgggga
acgttaagcgaaggtgttgacttcagagattctcgcggcagaaccgtgattgttgtgggc
gtggggtaccctgccctgaacgacaggataaaagctgtcgaatcggcatatgataccgtc
tttggctgcggagaaggctgggaatttgcagttcaggtgccaactataaggaaggtaagg
caggcaatgggaagggttgtccgttctcccggagacttcggggtaaggatcctccttgat
gcccgctatcagggctctcagatgcgcaagctgggcaaattttctgtttttggatatttc
ccacccgaagaaagtagagagtttcttgatgtgactcccagggaagtaggaagcctggta
gaagagttttttgcaaatatagttccctatgaatctgaaaacaaggaaactgaaatcaaa
aagactggaaaaaaagagccggagtctccggcttcacgccggccggaattcgggagcctc
gcagaaaaactctga
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