Methanosarcina horonobensis: MSHOH_3860
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Entry
MSHOH_3860 CDS
T03933
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhor
Methanosarcina horonobensis
Brite
KEGG Orthology (KO) [BR:
mhor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhor03016
]
MSHOH_3860
Enzymes [BR:
mhor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MSHOH_3860
Transfer RNA biogenesis [BR:
mhor03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MSHOH_3860
Prokaryotic type
tRNA splicing ligases
MSHOH_3860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKB80343
UniProt:
A0A0E3SJD6
LinkDB
All DBs
Position
complement(4729740..4731242)
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AA seq
500 aa
AA seq
DB search
MVESEDTAIEESGTESVQRDIKSLVRKISDNNWEIPKGHIPGMRVPGRLFVSENLLEGIE
PGTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDAEEGIISPGGVGFDINCGV
RLIRTNLQKEDVVPHIKRLTDELFNNVPAGVGSKSRFKASDKELDSAFLEGAKWAVDAGY
GVEADVEHCEGNGYLEGADPAYVSAKARNRGKPQLGTLGSGNHFLEVQYVDEIYDWEMAS
TFGLEEGQVTVMVHCGSRGAGHQICTDHLKELSQAVKKYGIELPDKQLACAPAQSKEAQD
YFKAMLCAANYAWANRQMITHWTRESFEKIFDRDAEDMGMSLLYDVAHNVAKLEEHNIDG
RKKEVYVHRKGATRAFPAGHPEVPFAYRDVGQPVLIPGSMGTPSFILCGAKEAMDVSFGS
ACHGAGRVMSRAHAKKEFHGQSVKENLEAHGITVRATHPSVIAEEAPGVYKSSSEVVNVV
HELGIARKVARVIPLGVAKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaagtgaagataccgctattgaggaatcaggtactgaaagcgtacagagagat
atcaaaagcctggtccggaagatctccgataataattgggaaattccaaaagggcatatt
cctggcatgagagttccagggcgcctgtttgtatccgaaaatctgcttgaaggtattgaa
cccgggacaattgatcagatcgcaaacgtggcaacacttcccggcattcagaaatattcc
atggcaatgcctgatgcccatctgggctatggatttgctatagggggggttgcggctttt
gatgcagaagaaggaattatcagtcccggaggagtgggttttgatattaattgcggagta
aggcttattcgcacaaaccttcaaaaagaagatgttgttcctcacataaagaggttgact
gacgagctatttaataacgtgcctgcaggtgtcggctcaaaaagccggttcaaagcctct
gacaaagagctggacagtgcatttcttgagggtgcaaaatgggcagtggatgcaggatat
ggtgtggaggcagatgtggaacactgtgaagggaatggctacctggaaggagcagacccc
gcttatgtgagtgctaaagccaggaacaggggaaagccccagttaggaactctcgggagc
ggtaatcatttccttgaagttcagtatgtggatgagatttatgattgggaaatggcttca
accttcgggcttgaagaaggccaggttacggtaatggttcactgcgggtcaaggggggca
gggcaccagatctgtacggatcatctaaaagagctttctcaggctgtgaagaagtacggg
attgagcttccggacaagcagcttgcctgtgctccggctcagtcaaaggaagcacaggac
tatttcaaagctatgctctgtgctgcaaactacgcctgggcaaacaggcagatgatcact
cactggacaagggaatcttttgaaaaaatctttgacagggatgctgaagacatgggaatg
agcctcctgtatgatgttgcccacaatgtggcaaaactggaggaacacaacattgacggc
aggaaaaaagaggtctacgtacacagaaaaggggcaacaagagcttttcctgcaggacat
ccggaagttccttttgcatacagggatgtgggacagccggttttaattcccggaagtatg
ggaactccctctttcatactctgtggtgcaaaagaggctatggatgtttctttcggtagt
gcctgtcatggggcagggagggttatgagcagagcccatgcaaagaaagagttccacggg
cagagcgtaaaagagaaccttgaagctcatggaatcactgtaagagcaactcatccttcc
gtgattgccgaagaagctcccggggtgtacaaatccagcagtgaggtggtaaatgttgtg
catgaacttggtattgcccgtaaggtcgcaagagttatccctcttggagttgcaaaaggt
taa
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