Microbacterium hominis: CXR34_15425
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Entry
CXR34_15425 CDS
T05238
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhos
Microbacterium hominis
Pathway
mhos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CXR34_15425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhos03021
]
CXR34_15425 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhos03400
]
CXR34_15425 (rpoC)
Enzymes [BR:
mhos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CXR34_15425 (rpoC)
Transcription machinery [BR:
mhos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CXR34_15425 (rpoC)
DNA repair and recombination proteins [BR:
mhos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CXR34_15425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AUG30720
UniProt:
A0A134DLF1
LinkDB
All DBs
Position
complement(3217798..3221673)
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESTTFDQLRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHRDMPTHEANLRLEIKNLGDRRDARVATRLAKLEEE
LAALEAEGAKADQKKKVKDAAEKEMASIRKNADDQVAKLERMWDEFRGLEVGQLKQEDDV
FHELQDRFGQYFEAYMGAESIQRRLQAFDLAAEAESLHLQISEGKGQRKIRAIKRLKVVN
SFLQTGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGAAGEGR
VFGSVGEAILAKDEGTLDLQAKVRIRIPGLTFLEGEAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVEVAASLDRIKDAGFYWATRSGVTVALSDIL
TPPNKGEIIAKYEKQAQKVQGQFEKGLVTDAERRQEQIKIWTEATDEVQAAMKANFPADN
TINRMVSSGARGNWLQIRNIAGIRGLVNNTKGEIMPRPIISSYREGLSVAEYFTATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSKGLEFTIAAPGADGTLVRDANVE
NSVFARTLAADVVAPSGEIVAEAGDDVGDVLIDKLVAAGVETIKVRSVLTCDSAVGVCAK
CYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEADGVIKIDETDKAKKVILTPDNGDEPHVYPVLKRATLLVEEGQRVTV
GQPILVGTLDPKEVMRVQGAREVQKYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTTLLPGELVDFKRYQQINREAVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVVVEATEEAKSERYPNRI
FASDGAYSDADLSYVDFDSFSTDDFTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgagtccaccactttcgatcagcttcgcatcggcctggccaccgctgacgacatc
cgtcgttggtcgtacggcgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
cccgagaaggacggtctgttcggcgagcagatcttcggaccttcccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagagctcggtccgccgtgagcgcatgggccacatcgagctcgccgccccc
gtcacccacatctggtacttcaagggcgtgccctcgcgcctcggatacctgctggacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtgatctcggtcgac
gaggacgcccgccaccgcgacatgcccacgcacgaggcgaacctccgcctcgagatcaag
aacctcggcgaccgccgcgacgcccgtgtggcgacgcgtctggccaagctggaggaggag
ctcgcggcactcgaggccgagggcgccaaggccgaccagaagaagaaggtcaaggacgcc
gccgagaaggagatggcctccatccgcaagaacgcggacgaccaggtcgccaagctcgag
cgcatgtgggacgagttccgcggcctcgaggtcggccagctcaagcaggaggacgacgtc
ttccacgagctgcaggaccgcttcggccagtacttcgaggcctacatgggcgcggagtcg
atccagcgtcgcctccaggcgttcgacctggccgccgaggccgagtcgctgcacctgcag
atctccgagggcaagggccagcgcaagatccgcgcgatcaagcgcctcaaggtcgtcaac
tcgttcctgcagaccggcatgagcccggcctccatggtgctcgacgtcgtcccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtgggcgcttcgccaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctccgtcgcctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgccccgtcaccggcaccggcaaccgtgcgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatcgtcggcccgcagctcaagctccaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggcggccaagcgtgccgtcgagcgcacgcgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgtcccgtgctgctcaaccgt
gcgcccacgctgcaccgtctcggcatccaggccttcgagcctcagctcgtcgagggtaag
gccatccagctgcacccgctcgtctgcgccgccttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctgtcggtcgaggcccaggccgaggcccgcgtgctgatgctc
gcgtcgaacaacatcctcaagccgtcggacggccgtccggtcaccctgccttcgcaggac
atgatcatcggcctccaccacctgaccacggtcaaggagggcgccgcgggcgagggtcgc
gtgttcggctcggtcggcgaggcgatcctggcgaaggacgagggcaccctcgacctgcag
gccaaggtgcgcatccgcatccccggtctgaccttcctcgagggcgaagcccccgagggc
tacgagcgccacggtctcgtggacgcctcgctcggtcaggcgatcttcaacgacacgctc
cccaagggctacccgttcgtgcgcgagcaggccgacaagggcaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaaggtcgaggtcgcggcatccctggaccgcatcaag
gacgccggcttctactgggccacgcgctcgggtgtcacggtcgcgctcagcgacatcctg
accccgccgaacaagggcgagatcatcgccaagtacgagaagcaggcgcagaaggtccag
ggccagttcgagaagggtctcgtgaccgacgccgagcgtcgtcaggagcagatcaagatc
tggaccgaggcgaccgacgaggtgcaggcggccatgaaggccaacttcccggccgacaac
accatcaaccgcatggtgagctcgggcgcccgtggtaactggctgcagatccgtaacatc
gcgggtatccgaggcctggtcaacaacaccaagggtgagatcatgccccgcccgatcatc
tcctcgtaccgcgaggggctgtcggtcgcggagtacttcaccgcgacgcacggtgcccgt
aagggtctggccgacacggccctccgtacggccgactcgggctacctgacgcgtcgtctc
gtggacgtctcgcaggacgtcatcatccgtgaggacgactgcggcacctccaagggcctc
gagttcacgatcgccgctccgggtgccgacggcacgctggtgcgcgacgcgaacgtcgag
aactcggtgttcgcccgtaccctcgccgccgacgtggtcgcgccctcgggcgagatcgtc
gcggaggccggggacgacgtgggcgacgtgctcatcgacaagctcgtggccgccggcgtc
gagaccatcaaggtccgctcggtgctcacgtgcgactcggccgtcggtgtctgcgcgaag
tgctacggccgttcgctcgcgaccggcaagctcgtcgacatcggtgaggccgtgggcatc
atcgcggcgcagtcgatcggtgagcccggcacgcagctgacgatgcgtaccttccacacc
ggtggttccgcgtcggccgacgacatcacgcagggtctgccccgtgtgcaggagctgttc
gaggcgcgtacccccaagggcgcgtccccgatcgccgaggccgacggtgtcatcaagatc
gatgagaccgacaaggccaagaaggtcatcctgacgcccgataacggcgacgagccgcac
gtctaccccgtcctgaagcgcgcgacgcttctcgtcgaggagggccagcgcgtcacggtc
ggtcagccgatcctcgtcggaacgctcgaccccaaggaggtcatgcgcgtgcagggtgcc
cgcgaggtgcagaagtacctcgtcggcggcgtgcagggcgtgtaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcggaaggtcaccgtg
gtcgaccacggcgacacgacgctgcttccgggtgagctggtcgacttcaagcgctaccag
cagatcaaccgcgaggccgtggccgagggcaagcgccccgcgtcgggccgtccggagctg
atgggtatcacgaaggcgtcgctcgcgacggagtcgtggctgtcggcggcatcgttccag
gagaccacccgcgtcctgacgcaggcggccatggagggcaagagcgacccgctcgtcggc
ctcaaggagaacgtcatcatcggaaagctcatccccgccggcaccggccttgcgaagtac
cgcaacgtcgtggtcgaggcgacggaggaggccaagagcgagcggtaccccaaccgcatc
ttcgcctcggacggcgcgtacagcgacgccgacctgagctatgtcgacttcgacagcttc
tcgacggacgacttcacgcccggcacctacaactga
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