Mesomycoplasma hyorhinis HUB-1: MHR_0056
Help
Entry
MHR_0056 CDS
T01301
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhr
Mesomycoplasma hyorhinis HUB-1
Pathway
mhr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MHR_0056 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhr03021
]
MHR_0056 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhr03400
]
MHR_0056 (rpoC)
Enzymes [BR:
mhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MHR_0056 (rpoC)
Transcription machinery [BR:
mhr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MHR_0056 (rpoC)
DNA repair and recombination proteins [BR:
mhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MHR_0056 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ADM21530
LinkDB
All DBs
Position
72874..77136
Genome browser
AA seq
1420 aa
AA seq
DB search
MSTNNKTDTKVSRQYAKIYENTIEKISLALATPENILEWSRGEVTKPETINYKTFKPERG
GLFDELIFGPLIDYKCPVCGKKYKKSNENTICLATKECEELKSKILPKIARRYSMGHIAL
NSPVLHFWFFKIDHSIISKLLGLRNEETGKSVSKASLESLIYYKSHIVLETGGLKSLAKN
KIIDISEAGVIYKNALQEILEKFEENSEEYQDISAALTDLTEVATSKIGRDYGIDFYELN
EIIEEYSDARISTGTKAIEYLLEHLDLKAEKEKVEQEIQEVQNSTSLSKKDSTKNQKRDK
LYKRLQVINAFLNSGQDPKSMIIKNLPVIPADLRPLVQLDGARHSTSDVNELYRRIIIRN
NRLKRWYETDAPILIIQNELRMIQEAIDALIDNQRKSPNPVTTKDNRPLKSISDALTGKK
GRFRQNLLGKRVDYSGRSVIVVGPKLKMHQAGLPRKMVAKLFEPWIIRRLIEQNSAPSIK
TARKMIEEENPQIWPHVAEVIKNKPILLNRAPTLHRLSIRAFEPVLVRGKAIQLHPLVTT
GFNADFDGDQMAVHVPISPEAIRETKELMFANKNILGPKDGEPIVNPSQDMILGLYYLSQ
EKNDAKGQGRYFGSYNEMMKAYEVKVLDLHARIALPFSEIKIKKSNALQENKYIISTVGK
FILNRIFPDNFPFIFDNKVDDLELNYDNQLAKYLVPMGTNIPQYIQQLPLNAALTKKDIA
KIVRQIFDTYDYVVSKEDVASVINKLDFENYHDSLLLYKKLLDFKGEPLSITHAMKLAEF
TTAEFELLTRINNIHSVNKIRVFEVKDKVEILEKVWFNYVNVVAAILDDIKDLGFVYSTN
SGVSMSISDIKIAPKKQEYLKEGEDYINQLNHFYAQGWITDDERYILSINKWTAVKNEIQ
KNLNETVELDPKNSLVIMMKSGARSNMSNFVQLAGMRGLMANNVKALKVDAENERVVRSI
VEVPVKSSFLEGLTSFEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQNIVVTQNDC
FSDFGFVVKQIIDTKTNTTIVPLAERIEGRFLNKDVVSPDGEVLAQTGDFINAHLAKKIV
DFGVTAVEIRSILSCHTKNGVCKKCYGKDLATNRLVAIGEAVGIIAAQSIGEPGTQLTMR
TFHTGGVAGVEDITGGFTRLIELIDAHEHPWGRPAQISPVHGVVAKIESVKNKEDGQLTG
STLITIEYKNEENLDAYKIIRVASNQKLRVQIGDKVVPGQKLVEGPIILKELLNYADART
LQNYLLKEIQRIYRMQGITISDKYIEIIIRQMLSKIQIIDNGDSDFFIGSIVDIFDYQEV
SGKLIAEGKRPPFGNIIIKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQVDRLEGLK
ENIIVGHKIPAGTNSNFEHKSKYDIRDPYSFFKPQINKNR
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaaataataaaactgatacaaaagtttctcgtcaatatgccaaaatttacgag
aatacaattgaaaaaatttctttagctctagctactcctgaaaacattttagaatgatca
agaggagaagtaactaaaccagaaacaattaattacaaaaccttcaaaccagaacgtggt
gggctttttgatgaattaatttttggtccactaatcgattacaaatgtcctgtttgtgga
aaaaagtacaaaaaatctaatgaaaacacaatttgtttagcaactaaagaatgtgaagag
ttaaaatcaaaaattttacccaaaattgctcgtcgttattcaatgggtcacattgcttta
aattctcctgttttacacttttgatttttcaaaattgatcactcaattatttcgaaatta
ctaggtttaagaaatgaagaaactggaaaatccgtttccaaagcttcattagagtcttta
atttactacaaatcccacatagttttagaaacaggtggtttaaaatctttagctaaaaat
aaaattattgacatttcagaagctggtgtaatttacaaaaatgcactacaagaaatctta
gaaaaatttgaagaaaattcagaagaatatcaagacatttccgcagctttaacagatctt
actgaagtagctacttctaaaatcggtagagattacggaatagatttttatgaactaaac
gaaattatcgaagagtactcagatgctcgaatttctacaggaactaaagcaattgagtat
cttttagaacatttagatttaaaagctgaaaaagaaaaagttgaacaagaaattcaagaa
gtgcaaaacagtactagtctttctaaaaaagattcaactaaaaaccaaaaaagagacaaa
ctttataaaagattacaagttattaatgcttttttaaattcaggtcaagatcccaaatca
atgattattaaaaatcttcctgttattccagctgatttacgtccattagtgcaattagat
ggtgctcgtcattctacttcagatgttaacgaactttatcgtcgtattatcattagaaac
aaccgtttaaaaagatgatatgaaacagatgctcccattttaattattcaaaatgaacta
agaatgattcaagaagctatcgatgctttaattgataatcaaagaaaatcaccaaatcca
gttactacaaaagataatcgtccacttaaatccatttctgatgcattaacaggtaaaaaa
ggtcgttttagacaaaatttacttggaaaacgtgttgattattcaggtagatctgttatt
gttgtaggtccaaaacttaaaatgcaccaagcaggtttaccgcggaaaatggtggctaag
ttattcgaaccttgaattattagaagactaattgaacaaaatagtgctccttctattaaa
acagcaagaaaaatgattgaagaagaaaatccacaaatttgaccacatgttgcagaggta
attaaaaataaaccaattttactaaacagggcaccaactttacaccgtctttcaattaga
gcttttgaacctgttttagttcgtggtaaagctattcaattacatccacttgtaacaaca
ggattcaacgctgacttcgatggtgaccaaatggctgtgcacgttcctatttcgcctgaa
gctattagagaaactaaagagttaatgtttgcaaataaaaacattttaggaccaaaagat
ggtgaaccaattgttaacccttcacaagatatgattttgggtctttactatctttcacaa
gaaaaaaatgatgctaaaggtcaaggtcgttattttggttcttataacgaaatgatgaag
gcatatgaagtaaaagtgcttgatttgcacgctagaatagcacttcctttttcagagatt
aaaatcaaaaaatcaaatgctttacaagaaaataagtacatcatttcaacagttggaaag
tttattttaaatagaatttttcctgataatttcccttttatctttgataataaagttgat
gatttagaactaaattatgataaccagttagcaaaatatttagtgccaatgggaacaaat
attccacaatacatccaacaacttcctttaaatgctgcactaactaaaaaagatattgct
aaaatagtacgtcaaatttttgatacttatgattacgtagtttcaaaagaagatgtagct
agtgtaattaataaattagattttgaaaattatcacgattctttacttttgtacaaaaaa
ctactggatttcaaaggtgaaccactttctattactcatgcaatgaaactagctgaattt
acaacagctgaatttgaacttctaacaagaattaacaacatccattcagttaataaaatt
agagtttttgaagtaaaagacaaagtagaaattcttgaaaaagtgtgatttaattatgta
aatgtagttgcagctattttagatgatattaaagatcttggatttgtgtactctacaaat
tctggtgtttctatgtctatttctgatattaaaatagcaccaaaaaaacaagaatatcta
aaagaaggtgaagactatatcaatcaattaaaccacttctacgcacaaggttgaatcact
gatgatgaaagatatattctttcaattaacaaatgaacggctgtaaaaaatgaaatccaa
aaaaatctaaacgaaacagttgaacttgatccaaaaaattcactagttattatgatgaaa
tcaggagctagatcaaatatgtctaacttcgttcaattagctggaatgcgtggattgatg
gcaaataacgttaaagctctaaaggtagatgctgaaaatgaaagagttgttcgttcaatt
gttgaagtgccagttaaatcttcattcttagaaggtcttacatcatttgagttctattct
tcaacacacggtgctcgaaaaggacttaccgatacagcgcttaacacagctaaatcaggt
tatttaactcgtcgtttagttgatgtagcacaaaacattgttgttactcaaaatgattgt
ttttctgactttggatttgtagtaaaacaaattattgatactaaaacaaacacaacaatt
gttcctttagcagaaagaattgaaggtagatttttaaacaaagatgtagtaagtccagat
ggtgaagtactagcacaaacaggtgattttattaatgcccatttagctaaaaaaatagtt
gattttggagtaacagcagtcgaaatccgttccattttatcttgtcatactaaaaatggt
gtatgtaaaaaatgttatggtaaagatttagcaacaaacagattagtagctattggtgaa
gcagttggaattattgctgcacaatcaatcggtgagcctggtacacagttaacaatgcgt
actttccataccggaggggttgctggtgttgaagatattacaggtgggtttactcgttta
attgaactaatcgatgcacacgaacatccatgaggtcgtcctgcacaaatttctccagtg
cacggagttgttgctaaaattgaatcagttaaaaacaaagaagatggacaacttacaggt
tctactttaattacaattgagtacaaaaatgaagaaaatttagatgcatacaaaataatt
agagttgcttcaaatcaaaaattaagagtacaaatcggtgataaagttgttccaggtcaa
aaacttgttgaaggtccaattattctaaaagaattattaaattacgctgatgctagaaca
ttacaaaactatcttttaaaagaaattcaaagaatttatcgtatgcaaggtattacaatt
tcagataaatatattgaaattattattagacaaatgctttcaaaaattcaaattattgac
aatggagattcagatttcttcatcggttcaattgtagatatttttgattaccaagaagta
agtggaaaactaatagcagaaggaaaaagacctccttttggaaacattatcattaaagga
gcaaaacaaattcctttactttctaactcattcttagctgctgcatcatatcaagaaact
tcaaaaattttagttcattcagtaatttcttctcaagttgatagattagaaggtcttaaa
gaaaacattattgttggtcacaaaattccagctggaacaaactctaattttgaacataaa
tccaaatatgacattagagatccatattcattctttaaaccacaaattaataaaaatcgt
taa
DBGET
integrated database retrieval system
