Metabacillus hrfriensis: QLQ22_08850
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Entry
QLQ22_08850 CDS
T11108
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhrf Metabacillus hrfriensis
Pathway
mhrf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QLQ22_08850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhrf03400
]
QLQ22_08850
Enzymes [BR:
mhrf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QLQ22_08850
DNA repair and recombination proteins [BR:
mhrf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QLQ22_08850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
WHZ59414
LinkDB
All DBs
Position
complement(1787516..1789354)
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AA seq
612 aa
AA seq
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MYVKPMLPTLSAGIPEGEKWSYEVKYDGFRAILSISEEGITFTSRNGKDLGALFPEIMNA
VQSIFDRLKDFMPCIFDGELVSLKNPYKASFEVIQQRGRLRAKDKINQEAETNPCQYLIF
DLLECKQEKTAFLDYLSRKTLLSNIASSCGLPLEPRKSNQLIQYVPSFAGHEALWSGIRA
FDAEGMIAKENKSKWEAGVRTKSWLKIKNYKYALFFIIGYDKKNGYFKAGVFKGENVIDT
GVFSHGLEGSDRDSLIRILKENKESEDSQWITISPAICVELQFLELYKNQLREPSFSAFR
FDLSPHECTWEQLKLKAVSFHEEVQITHPDKPLWENPLRTKTDYLAYLVEVSDYMLPFLK
NKSLTVIRYPHGTSDEAFYQKNCPDYAPEFVETTKQDGIDYILCNDISTLIWLGNQLSLE
FHIPFQTYDSSCPNEIVFDLDPPSRADFHMAVSAALEMRKLFDSFGLASFPKLSGGKGIQ
IHIPITNNRFSYDQTKKFTSFIAAYLVNAYPEMYTIERLKKNRGNRLYVDYIQHAEGKTI
IAPYSVRGNPEDAYAAAPLFWDEVVQDLKVNQFTMDYVAERIKKGCPFQDYFSSPQDEVI
QQVLDFIEKNKQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtatgttaaaccaatgcttccaacactttcagccggaatacctgaaggagaaaagtgg
agctatgaagtcaaatatgatggattcagggcaattttgtccatttcagaagaaggcatc
acgtttacaagccgaaatgggaaagatttaggtgctcttttccccgaaatcatgaacgct
gtccaatctatctttgacaggctgaaagattttatgccgtgcatatttgacggcgagctt
gtctcattaaaaaatccatataaagcatcctttgaagtcattcagcagcgcggaaggctg
agggcaaaagacaagatcaatcaagaggcagaaacaaatccatgtcagtatttaatcttt
gaccttcttgaatgcaaacaggaaaaaacagcttttcttgactatctttcacgaaaaacg
ctcttgtctaacatcgcttcatcatgcggactgcctcttgaaccacgtaaaagcaatcag
ctcatccaatacgttccttcctttgcgggccatgaggctttatggagcggcattcgagca
tttgacgcggaaggcatgattgcaaaagaaaataaaagcaagtgggaggccggagtgcgc
acgaaatcctggctgaaaataaaaaattacaaatatgctttgtttttcattataggatat
gacaagaagaatgggtattttaaagcgggtgttttcaaaggagagaatgtgatagacacg
ggtgttttttctcatgggctggagggatctgaccgagactctttaattaggattctaaag
gaaaataaggagagcgaggattcacaatggatcacgatttcccctgcgatctgcgtagag
ctgcaatttttggagctctataaaaatcagctgcgtgagccctctttttctgctttcagg
ttcgacctgtccccgcatgaatgcacctgggagcagctgaagctgaaggctgtttcattt
cacgaagaagttcagatcacacaccctgataaaccgctgtgggaaaatccactgcggaca
aaaactgactatcttgcttatttagtggaggtttctgactatatgcttcctttcttgaaa
aataaatctctcacggttattcgatatccgcacggaacctctgatgaagccttttatcaa
aaaaattgtccggattatgcgcctgagtttgtggaaaccacaaagcaggatggaattgac
tatatcttgtgcaacgacatctcaactttgatctggcttggaaatcagctttccctggaa
tttcatattcctttccagacttatgattcttcctgtccgaatgaaattgtctttgattta
gatccgccatcgagggctgattttcacatggctgtctcagcagcgctcgaaatgcgcaaa
ctctttgactcattcggacttgcttcattcccaaaattatcaggcggaaaaggaattcaa
attcatattcccattaccaataatcggttttcatatgaccagacaaaaaagtttacatcc
tttattgctgcatatttagtgaatgcatacccagaaatgtatacgatcgaacggctcaaa
aagaaccgcggaaaccggctgtatgtcgactacattcaacatgctgaaggaaaaacaatc
attgcgccctattctgtcagagggaatcccgaagatgcatatgcagcggcccctttattc
tgggatgaagtggtgcaagatttgaaggttaatcagtttactatggattatgtagcagag
cggattaaaaagggctgcccatttcaagattacttctcttcacctcaggacgaagtgatt
cagcaggtgttagattttatagagaaaaataagcagtaa
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