Mannheimia haemolytica USDA-ARS-USMARC-185: D648_21010
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Entry
D648_21010 CDS
T02522
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mht
Mannheimia haemolytica USDA-ARS-USMARC-185
Pathway
mht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D648_21010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mht03019
]
D648_21010
03009 Ribosome biogenesis [BR:
mht03009
]
D648_21010
Enzymes [BR:
mht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D648_21010
Messenger RNA biogenesis [BR:
mht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D648_21010
Ribosome biogenesis [BR:
mht03009
]
Prokaryotic type
rRNA processing factors
D648_21010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
KH_11
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AGI36104
LinkDB
All DBs
Position
435403..438345
Genome browser
AA seq
980 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKA
KNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIREATRQDRARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIAL
SILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQIVVVPSESMETP
HFSVYRLRENEITPTLSYDLTKHYEARHEEEHPHHHHQEDVLVTRNEPVITVESVLQSSE
LNLQPSPTPTEPPKPSLLSRLIATIKGWFSEEKVEEKPKPKARNQRERRQRRERPNRNAK
AENQERKTPQAQTTPAEEKPMRSEKKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDL
RKKVRIETQEVEVENLTPAVEETVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGR
ENNRQRRLPRHLRVGNQRRRENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEK
ASFLSVDQMLEQQENQLVETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKE
EKVASEDVKPVEVKEHIAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNP
IEVPKSTYESDYRFNGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKG
FGGYTSAVSQVQSAPRSTNG
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaaaaagaagagttgcgtgttgccctcgttgat
gggcaacgcttatttgacttggacattgaaagcccgggtcacgaacagaaaaaatccaat
atctacaagggtaaaattacccgtgtcgaaccaagccttgaagctgcattcgtagattac
ggtgcagaacgccacggcttcctacctttaaaagaaatttcccgagaatacttcccgtca
gactatgtgtttaacggtcgcccgaatatcaaagatattattcaagaagggcaagaagtg
attgttcaagtcagcaaagaagagcgtggtaacaaaggagcagccttaaccacctttatt
tcgcttgcgggcagttacttagtcttaatgccgaacaaccctcgtgccggtggtatttcc
cgccgtattgaaggtgatgagcgtttagaactcaaagaggctttagactgcttagatgta
ccggaagacgtgggcttaatcgttcgtaccgccggtgtcggcaaatcgccggaagagtta
caatgggacttaaaagtcttgttacaccactgggaagcgattaaaaaagcggcggaatct
cgcccagctccgttcttaattcaccaagaaagtgacgtgattgtgcgtgcaattcgtgac
tatctacgccgtgatattggcgaaatcttaatcgacaacaaaaaagtgttcgagaaagcc
aaaaaccacattcgccttgttcgcccggatttcatcaaccgtgtgaaattatacgaaggc
gaagtaccactattcagccactatcaaattgaatcgcaaatcgaatcggcattccaacgt
gaagtgcgtttaccttccggtggctctatcgttattgatgtaacagaagccttaacagca
attgatattaactcctcacgttcaacccgtggcggcgatattgaagaaaccgctcttaac
accaacttagaagcggcagatgaaattgcccgtcagttacgtttgcgtgacttaggtggt
ttgattgtgatcgactttatcgatatgacaccggttcgccaccaacgtgaagtagaaaac
cgtattcgtgaggcgacacgccaagaccgtgcgagaatccaatttgcccgtatttcccgt
ttcggtttgttagaaatgagccgtcagcgtttaagcccatcattaagtgaggcttcatcg
catatctgccctcgctgtcagggaactggtaaagtacgtgataatgaatcaatcgcactg
tcaatcttacgtttattagaagaagaggcaatcaaagaaaacactgcacaggttcacacc
attgtgccggtgcaaatcgccagctacttactcaacgaaaaacgtaaagcgatttccagc
attgaaaaacgccacgatgtacaaattgttgtagtaccgtctgaaagtatggaaacgccg
catttcagcgtatatcgcctgcgtgaaaatgaaattactccaacgttaagctacgattta
accaagcattacgaagctcgtcatgaagaagaacacccacatcatcaccatcaagaagat
gtgctggttacccgtaacgagccggtgattacggtagagtcagtgttacaaagctcggag
ctgaatctccaaccttcgccaacaccaaccgaaccaccaaaaccatcgctgttaagccgc
ttaattgcgaccattaaaggctggtttagtgaagaaaaagtggaagaaaaaccgaagccg
aaagcacgcaatcagcgtgagcgtcgccaacgccgtgaacgcccgaaccgtaatgctaaa
gcggaaaatcaagagcgtaaaactccgcaagctcaaactactccagcggaagaaaaaccg
atgcgtagcgagaaaaaagcacgccgagcggtagtggaagaagtttccggtgtaaccgag
caagagagtcgtagcaactcccgtgaggttcaaactgaacgtcgccaacgccgtgatcta
cgtaaaaaagtgcgtatcgaaacacaagaagtagaagtggaaaatctaacacctgctgtt
gaggaaacggtggcaaaacaagttgaaaatgtgcaaaaaaatcaacaaattcaaccgctt
gcaacccaagaagtacctgttgaaacagctcctgaggtagaaacaacgaacgaaggacgt
gaaaataaccgccaacgccgtttacctcgccatttgcgtgtgggcaatcagcgtcgtcgt
gaaaatcaacgcaatcaggttatttctcctatgcctctaacttcagctgttgcttcgcct
gagcttgcgagcggtaaagtttgggttcaggttacctctactgtcaaagtagaggaaaaa
gcatcattcttatctgttgatcaaatgcttgaacagcaagaaaatcagcttgttgagaca
gagaaaaaatcagaagagaagaagcttcatacagttagtccgctaggtggctttgtagca
caagcaactaaccgtgatttggttaaggagaagcaagaacagctttccaaaccgaaagaa
gaaaaagttgcttctgaagacgtaaaaccagtagaggtaaaagagcatattgctccattt
ggtagtgttgttgctcagcattctgaacgtgatttagttaaagagaaaaatgagcgagtc
agtaaattccaatcgcaagcaacggttgcaccagcgattgtggaagaggttactaacccg
attgaagtgccaaaatcaacttacgaaagcgattatcgatttaacggcagattaggtaca
ttctctcgtgttgagcatacccaagccgctatgaccattgcttctgcaccaagtgacaag
cttgaagtagtcgaaattagccaatggcaaaactctaaatactatttctatggcaaaggg
tttggcggatataccagcgcagtgagccaagtgcagtcagcgcctcgttcaaccaatggt
taa
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