Mesorhizobium huakuii: MCHK_2132
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Entry
MCHK_2132 CDS
T06432
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mhua
Mesorhizobium huakuii
Pathway
mhua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCHK_2132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhua03019
]
MCHK_2132
Enzymes [BR:
mhua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCHK_2132
Messenger RNA biogenesis [BR:
mhua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCHK_2132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AID29946
LinkDB
All DBs
Position
complement(4302933..4304354)
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AA seq
473 aa
AA seq
DB search
MTNENTLPGNDTAELFGFAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIA
QTGSGKTAAFALPILSKIIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVST
ALVLGGVSRFSQVKKVAPGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGF
INDVKRIAKATAPDRQTALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVF
ARTKQKRQVLSTMLADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQK
ALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAI
TLCDPSENSKLRQVERIIRTKLPIVADHLGSPDPQRNPAEKNERFEPANDRNDRNGRRDG
RRPGGENKGNGFGKKRFGDKPAFAGERKPEGAKPFKGNNKRRFGGKRPAARAA
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaacgaaaacacattgcccggcaacgataccgcggaactcttcggtttcgcagcg
ctgggaatcacgggtgcgctgctcaaggccacccacaatgccggattcaccgaaccgaag
ccgatccagatgcaggcaatcccgccccagctggaaggccgtgacattttcggcatcgcg
cagacgggctccggcaagaccgcggcctttgcgctgcctatcctgtcgaagatcatcgcg
ctcggcaccaagcggcgcgccaagacgacccgcgcgctcatcctggcgccgacccgcgag
ctcgccgtgcagatcgaggacaccatcaagatcctcgccaagggcgcgcatgtctcgacg
gcactcgtgctgggcggcgtctcgcgcttcagccaggtgaagaaggttgctcccggcgtc
gacatcctcattgccacgcccggccgattgaccgacctggtgcgcgagggcgacctcatc
ctctccgacaccaaatggctggtgctggacgagggcgaccgcatgctcgacatgggcttc
atcaacgacgtcaagcgcatcgccaaggcgaccgcgcctgaccgccagacggcgctgttc
tcggccaccatgccggacgagatcgccgaactggccaagggtcttctgaagaacccggtc
cgtatcgaagtctcgccgcaaagcaccgcggcggccgagattgtccagggcgtcgtcttc
gcccgcaccaagcagaagcgccaggttctgtcgacaatgctcgctgacgaggcgatgaag
tccgtcatcatcttttcgcgcaccaagcatggcgccgaccgggtgaccaaggacctcgag
cgcgatggcttcaaggcggccgtcatccatggcaacaagtcgcagaatgcccgtcagaag
gcgctgaacgattttcgcgatggatcggtccgcattctggtcgcgaccgacatcgcggcg
cgcggcatcgacgtccccggcatcagccatgtcgtgaatttcgacctgccggatgaggcg
gaaagctacgtccaccgcatcggccgcaccggccgcaacggcatggacggcatcgcgatc
acgctttgcgatccttctgagaacagcaagctgcgccaggtcgagcgcatcatccgcacc
aaactgccgatcgtcgccgaccatctcggcagccccgatccgcagcgcaatccggctgaa
aagaacgagcgcttcgagcccgccaatgatcgcaacgaccgcaatggccgtcgtgacggc
cggcggccgggcggcgaaaacaagggcaacggctttggcaagaagcggttcggcgacaag
ccggcctttgccggtgagcgcaagccggaaggcgccaagcccttcaagggcaacaacaag
cgccgtttcggcggcaagcgtccggcagcgcgggctgcttaa
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