Mesorhizobium huakuii: MCHK_2510
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Entry
MCHK_2510 CDS
T06432
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhua
Mesorhizobium huakuii
Pathway
mhua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCHK_2510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhua03400
]
MCHK_2510 (mfd)
Enzymes [BR:
mhua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCHK_2510 (mfd)
DNA repair and recombination proteins [BR:
mhua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MCHK_2510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AID30323
LinkDB
All DBs
Position
3934600..3938097
Genome browser
AA seq
1165 aa
AA seq
DB search
MSLIPTIGLPKGRAGQFIVDGVADGYEAFALVQAAFEIAPHKPVLFVARDGQRLPVIIEA
LAFAAPGLPVLELPAWDCLPYDRVSPGSDAAAKRLDALTAMIALAKKPHRAVILTTANAL
LQRIPPADLVEAQTFHARPGNQIDMNALIARLETSGFERVPTVRGIGEFAVRGGILDLFA
PGWTEALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRFRRSYIE
AFGAPQRDDGLYAAVSEGRRFAGMEHWLPFFYERLETVFDYLPDTPVVFDHLAHEALAER
HTLILDHYEARKKQADAALKDAVPYKPVAPDLLYLSPENLIASLGPREAIDFTPFDAPDA
GAKKVYHAGSRHGRSFVEERADPNINVFDVVVRHIADERAARRRIVIAGWTEGSLDRLGQ
ILTEHHLGNLKQVETLAQAEQLEPGQAALAVLPLESGFETEKLVVVAEQDILGDRLIRRS
KRKKRASDFIAEASALSAGDIVVHTDHGIGRFIGLRTIEAVGAPHDCLEIHYAGDDRLFL
PVENIELLSRYGSDSAEATLDKLGGGAWQSRKAKLKRRLLDMAGQLIRIAAERQMRAAPA
LVPAEGLYDEFAARFPYEETDDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAA
FIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPVRVAQASRLVGAKELAETKKALAEG
QVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRT
LQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDL
SEIHDFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANT
LIIHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDAAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIA
VGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGAELIDRFGPLPDEVKHLLKIVF
IKALCRKANVEKLDAGPKGVVIHFRKREFSNPVGLVKFIGEQGSLAKIRPDHSVVFTRDW
PTAEKRLAGSAVVMTQLARLVEKAV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcattcccaccattggtctgccgaaaggccgtgccggccagttcatcgtcgat
ggtgtcgccgatggatacgaggcgtttgcactggtgcaggccgcattcgagatcgcgccc
cacaagccggtgctgttcgtggcgcgcgacggccagcgcctgcctgttatcatcgaggca
ctggcctttgccgcgcccggactgccggtgctggaactgccggcctgggactgtctgccc
tacgatcgcgtctcgcccggctcggatgccgccgccaagcgcctcgacgcgctgacggcc
atgatcgcgctggcgaagaagccgcatcgcgccgtcatcctcaccaccgccaatgcgctg
ctgcagcgcattccgccggctgatctggtcgaggcacagacctttcatgccaggcccggc
aaccagatcgacatgaacgcgctgattgcgcggctggaaacgtccggcttcgagcgggtg
ccgacagttcgcggcatcggcgagttcgcggtgcgcggcggcattctcgaccttttcgcg
cccggctggaccgaggcgctcaggctcgatttcttcggcgacacgctggaatcgatccgc
gtcttcgatgccgccacccagcgcaccaccggccagcgcaagtcgatggcgctgcaggcg
atgagcgaagtggcgctgacgcctgaaaccatcagccgcttccgccgctcctatatcgaa
gcctttggcgcgccgcagcgcgacgacgggctctacgcggcagtcagtgagggcaggcgg
tttgccggcatggagcattggctgccgttcttctatgagcggctggagacggtgttcgac
tatctgccggatacgcctgtggttttcgaccatctggcgcatgaggcgctggccgagcgc
cacacactgatcctcgatcactatgaagcgcgcaaaaagcaggccgatgctgcgctgaag
gatgccgtgccctacaagccggtggcaccggatctgctctacctctcgccggagaacctg
atcgcctcgctcggtccacgcgaagcgatcgacttcacgcccttcgacgcgcccgatgcc
ggcgcgaaaaaggtctatcacgccggctcgcgccatggccgcagcttcgtcgaggagcgc
gccgatccaaatatcaacgtcttcgatgtcgtcgtcaggcatatcgccgacgagcgcgcg
gcacgtcggcgtattgtcatcgccggctggacagagggttcgctcgaccggcttggccag
attctcaccgagcatcatctgggcaatctcaagcaggtcgagacgctggcgcaagccgaa
cagctcgagccggggcaggcggcattggccgtgctgccgcttgaatccggcttcgagacc
gaaaaactggtcgtcgtcgccgaacaggatattttgggcgaccggctgatccggcgttcc
aagcgcaagaagcgcgcctccgacttcatcgcggaggcctctgcgctgtcggccggcgat
atcgtcgtccacactgaccatggcattggccgcttcatcggcctgcgcaccatcgaggcg
gtcggcgcgccgcatgactgcctggaaatccactatgccggcgatgaccggctgttcctg
ccggtcgaaaacatcgagcttctgtcgcgttatggctccgactccgccgaggcgacgctg
gacaagctgggtggcggcgcttggcagtcgcgcaaggccaagctgaagcggcgcctgctc
gacatggccgggcagctgatccgtatcgccgccgagcggcagatgcgcgccgcgccggcg
ctggtgccggccgaaggtctctatgacgaattcgccgcgcgtttcccctatgaggaaacc
gacgaccagcagacggccatcgactcggtcagggatgacctcggcgccggcaagccgatg
gaccggctgatctgcggcgatgtcggcttcggcaagaccgaagtggcactgcgcgccgcc
ttcatcgcggcgatggaagggttccaggtcgcggtcgtggtgccgacgacgctgttgtca
cgccagcatttcaagaccttttcccagcgcttctcgggccttcccgtccgcgtcgcgcag
gcctcgcggctggtcggtgccaaggaactggcggagacgaagaaggctctggccgagggc
caggtcgacatcgttgtcggcacccatgcgctgctcggctcctcgatctcgttcaagaat
ctcggcctgctgatcatcgacgaggagcagcactttggcgtcaagcacaaggaacggctg
aaggatctgaagaccgatgtccatgtgctgacgctgtcggcgacgccgatcccgcgtacg
ctgcaactggcgctgacgggcgtgcgcgaactgtcgctgatcgccacgccgccggtcgac
cgcatggcggtgcgcaccttcatctcgcctttcgatccgttggtcattcgcgagacgctg
cttcgcgagcgttatcgtggcggacactccttctatgtcgtcccgcgcatcagcgatctc
tcggaaatccatgatttcctgaaagaatcggtgcccgaactgaaagtggctgtggcccac
ggccagatgccgccgggcgaactcgacgacatcatgaacgccttctatgatgggcaatac
gatgtgcttctgtcgaccaccatcgtcgaatccggcctcgacatcccgaccgccaacacg
ctgatcatccatcgcgccgacatgttcggcctctcgcagctctatcagttgcgcggccgc
gtcggccgctccaaggtgcgcgcctacgcgctgttcacgctgccggccaaccgcaaactg
actgacgcggccgagcgccggctgaaagtgctgcagtcgctcgacacgctgggcgccggc
ttccagctcgccagccacgatctcgatataaggggcgccggtaatctcttgggcgaagag
cagtccggccatatcaaggaggtcggcttcgagctctaccagcagatgctggaagaggcc
gtagccgaggtgaaggattccggcgaggtccaggatggcggctggtcgccgcagatcgcc
gtcggcacggcggtgatgatcccggaaagctatgtgccggacctgcagctcaggctggcg
ctttaccgccgcctcggcgacctcgaaaacaccgaggagatcgacgctttcggcgccgaa
ctgatcgaccgtttcggcccgctgccggacgaggtgaagcatctcttgaagatcgtcttc
atcaaggcactctgccgcaaagccaatgtcgagaagctcgatgcgggcccgaagggcgtc
gtcattcatttccgcaagcgcgagttctccaacccggtcggcctggtcaagttcatcggc
gagcagggttcgctggccaagatccgccccgaccacagcgtcgtcttcactcgcgattgg
ccgaccgccgagaagcggctggcgggctcggcggtggtcatgacgcaactggcgcgcctt
gttgagaaggctgtttag
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