Microcella humidisoli: NNL39_09185
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Entry
NNL39_09185 CDS
T09551
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhum
Microcella humidisoli
Brite
KEGG Orthology (KO) [BR:
mhum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhum03016
]
NNL39_09185
Enzymes [BR:
mhum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NNL39_09185
Transfer RNA biogenesis [BR:
mhum03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NNL39_09185
Prokaryotic type
tRNA splicing ligases
NNL39_09185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UTT61846
UniProt:
A0ABY5FU65
LinkDB
All DBs
Position
1902351..1903532
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AA seq
393 aa
AA seq
DB search
MQKISKTLASWASILDEKTLEQARTTATMPFIYPHLALMPDAHLGLGATVGSVIPTLRAV
MPAAVGVDIGCGMIAVLTDTTVDQLPDDRTPLRLAIERAIPLSAGAANNRIVATAQPRVA
ELEAMAETAGFDPAQRLGRWREQLGTLGSGNHFIEVSADELDRVWLFLHSGSRGVGNKIA
QTYIDIAKKLAAQWFISLPDADLAYLVEGTPEFSRYIAELRWAQHYALLNREEMMDRVVR
QFTEWVGGDGSGNSVTQLERINCHHNFTQKETHFGKEVWVSRKGAISAKAGELGLIPGSM
GTASYVVEGTGNAMALESSPHGAGRLYSRSAARKTFTQDQLREAMVGIEFRDTDAFIDEI
PHAYKPIDEVMADAADLVTIKHTLRQLVNVKGD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatctcgaagaccctcgccagctgggcgagcatcctcgacgagaagacgctc
gagcaggcgcgcacgaccgcgaccatgccgttcatctacccgcacctggccctcatgccc
gacgcccacctggggttgggcgcgacggtcggctcggtcatcccgaccctgcgggcagtc
atgccggcggccgtcggggtcgacatcgggtgcggaatgatcgcggtgctaaccgacaca
acggtcgaccagttgccggatgaccgcacgccgttgcggcttgccatcgagcgggccatc
cccctgagcgcgggtgcggcgaacaaccgcatcgtcgcaacggcccagccgcgggtggcc
gagctcgaggccatggccgagacggccgggttcgacccggcgcagcggctggggcggtgg
cgggagcagctcggcacgctcggcagcggcaaccacttcatcgaggtgtcggccgacgag
ctcgaccgggtgtggctgttcttgcactcgggcagccggggtgtgggcaacaagatcgcc
cagacctacatcgacatcgcgaagaagctcgccgcgcagtggttcatctcactgccggat
gccgacctcgcgtacctcgtggagggcaccccggagttcagccggtacatcgccgagctt
cggtgggcgcagcactacgcgctgctcaaccgggaggagatgatggatcgggtcgtgcgg
cagttcaccgagtgggtgggcggcgacggctctggcaacagcgtgacgcagcttgagcgg
atcaactgccaccacaacttcacgcagaaagagacccacttcgggaaagaggtgtgggtc
tcgcggaagggcgcgatctcggcgaaggccggagagctggggttgatccccggctcgatg
ggcaccgcgtcgtacgtcgtggagggcacgggcaatgccatggcgctcgagtcgtcgccg
cacggagccggacggctctactcgcggtcggcggcccggaagaccttcacgcaggatcag
ctgcgggaggccatggtgggcatcgagttccgcgacaccgatgctttcatcgacgagatt
ccgcacgcgtacaagccgatcgacgaggtgatggccgatgcggccgacctggtcacgatc
aagcacacgctgcggcagctcgtcaacgtgaagggcgactga
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