Microcella humidisoli: NNL39_09890
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Entry
NNL39_09890 CDS
T09551
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mhum
Microcella humidisoli
Pathway
mhum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL39_09890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhum03019
]
NNL39_09890
03009 Ribosome biogenesis [BR:
mhum03009
]
NNL39_09890
Enzymes [BR:
mhum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NNL39_09890
Messenger RNA biogenesis [BR:
mhum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NNL39_09890
Ribosome biogenesis [BR:
mhum03009
]
Prokaryotic type
rRNA processing factors
NNL39_09890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
UTT61978
UniProt:
A0ABY5FUR0
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All DBs
Position
2042613..2045162
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AA seq
849 aa
AA seq
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MVSDDNEKTTKKRTRLFASRAPKKVSEHAAQSEPGFDGGPLAEPVDDASATPAAIDTAPD
AVMDAAEAAPADVAAAEPDAAPEPEAETGSEPEAATEPEAATETAPAAAKAAPVFPELKP
ESTTSLLFFAPPVEAVAPRGGAVDGRSSRAPLDLDDEEGTVTSRRRSRSRRTRGGAEGDT
GRTESPRDDEPSTRSRAGRRPAELITEPQRIKGSTRLEAKKQRRRDGRDAGRRRPVVTEA
EFLARRESVDRQMIVRSKDGRIQIGVLEDGVLVEHYVARSQESSLIGNVYLGKVQNVLPS
MEAAFVDIGRGRNAVLYSGEVDWDSAALDSDGKTQPRRIELALKPGDKVLVQVTKDPIGH
KGARLTSQVSLPGRYLVYVPNGSMSGISRKLPDTERARLKKILKEVLPENVGVIVRTAAE
GATEEQLTLDVQRLTSQWAEISKQLSTTPAPAMLHSEPDLLIKIIRDVFNEDFRSLVISG
ADAQQTIEAYLRGVAPDLLDRVQKHEGDRDPFDEYRISEQIEKALDRKVWLPSGGSLIID
RTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAAEELVRQLRLRDIGGIIVVDFIDMVLE
SNRDLVLRRLMECLSRDRTKHQVAEVTSLGLVQMTRKRLGLGLLETFSESCEVCAGRGLI
VHHEPVVRHRQGSDTAANGGGIGGSSGRRRGGSGNGNGGNGGGQNGSNRGGSGRSGTPAA
AHAITDDVSRAVAAIAAKTVHHDAPATGAIELPVLASGTATDSAAETVVETATAASTAPA
EAATVEILDIPVTKKPARGRAPIDATTADQLLGSVLESLPEPPAPGTRKRASRRVSSGTI
TTQGAPDAS
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgacgacaacgagaagacgaccaagaagcgcacgcgactgttcgcgagccgc
gcgccgaagaaggtcagcgagcacgccgcgcagagcgagccgggcttcgacggcggcccg
ctcgccgagccggtcgacgacgcgtcggcgactcccgcagcgatcgacacggcgcccgat
gcggtgatggatgcggccgaggccgctcccgccgacgtcgctgccgccgagcctgacgcc
gcgcccgagcccgaggctgagaccgggtccgagccggaggccgcgactgagcctgaggcc
gcgaccgagaccgcgcccgccgccgcgaaggccgcgcccgtgttccccgagctcaagccg
gagtcgaccacctcgctgctgttcttcgcgccgcccgtcgaggccgttgcgccgcgcggc
ggtgccgtcgacggccgatcgagccgcgcgcccctcgacctcgacgacgaggagggcacg
gtcacgagccgccgccgctcgcgctcgcgccgcacccgcggcggggccgagggcgacacc
ggtcgcaccgagagcccgcgcgacgacgagccgagcacgcgctcgcgcgccggaaggcga
cccgccgagctcatcaccgagccccagcgcatcaagggctcgacgcgcctcgaagccaag
aagcagcgccgccgcgacggccgcgacgccggtcgtcgccgcccggtcgtgaccgaggcc
gagttcctcgctcgccgcgagagcgtcgaccgccagatgatcgtgcgctcgaaagacggg
cgcatccagatcggcgtgctcgaagacggtgtgctcgttgagcactacgtggctcgctcg
caagagtcgagcctcatcggcaacgtctacctcggcaaggtgcagaacgtgctgccgagc
atggaggccgccttcgtcgacatcgggcgcggccgcaacgccgtgctctactcgggcgag
gtcgactgggattcggccgcgctcgacagcgacggcaagacccagccgcgccgcattgag
ctcgcgctcaagcccggcgacaaggtgctcgtgcaggtcacgaaagaccccatcggccac
aagggcgcccgcctgacgagtcaggtgagcctgcccggccgctacctcgtctacgtgccg
aacggctcgatgagcggcatcagccgcaagctgcccgacaccgagcgcgcccgcctcaag
aagattctcaaagaggtgctgcccgagaacgtcggcgtcatcgtgcgcacggcggccgaa
ggcgcgacggaagagcagttgacgctcgacgtgcagcgcctcacgagccagtgggccgag
atcagcaagcagctctcgacgaccccggctccggccatgctgcacagcgagcccgacctg
ctcatcaagatcatccgcgacgtcttcaacgaagacttccgctcgctcgtcatcagcggg
gcggatgcgcagcagacgatcgaggcctacctgcgtggcgtcgctcccgatctgctcgac
cgcgtgcagaagcacgagggagaccgcgaccccttcgacgagtaccgcatctcggagcag
atcgagaaggccctcgaccgcaaggtctggcttccctcgggcggctcgctcatcatcgac
cgcaccgaggccatgacggtcgtcgacgtcaacaccggcaagttcgtcggctcgggcggc
aacctcgaagagaccgtcacgaagaacaacctcgaagcggccgaagagctcgtgcgccag
ctgcgcctgcgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtgctcgag
tcgaaccgcgacctcgtgctgcgccgcctcatggagtgcctgagccgcgaccgcacgaag
caccaggtcgccgaggtcacgagcctcggcctcgtgcagatgacccgcaagcgcctcggc
ctcggcctgctcgagaccttcagcgagtcgtgcgaggtctgcgccggtcgcggcctcatc
gtgcaccacgagcccgtcgtgcggcaccgccagggctcggacaccgcagccaacggcggc
ggcatcggcggctcgagcggtcgccgacgcggtggatcgggcaacggtaacggcggcaac
ggcggcgggcagaacggctcgaaccgcggcggctccggccgctccggcacgccggccgcg
gcgcacgccatcaccgacgacgtgagccgcgcggtcgccgcgatcgccgcgaagaccgtg
caccacgacgcgcccgcgacgggcgcgatcgagctgcccgtgctggcgagcggcaccgcg
accgactcggcggccgagacggtcgtcgagaccgcgaccgccgcatccaccgccccggct
gaggccgcgacggtcgagatcctcgacatccccgtcacgaagaagccggcacgcggccgc
gcgccgatcgacgcgacgacggccgaccagctgctcggctcggtgctcgagtcgctgccc
gagcccccggcccccggcacgcgcaagcgcgcctcgcgacgggtctcgagcggcaccatc
acgacccagggcgcgcccgacgcgtcgtga
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