Mesomycoplasma hyorhinis DBS 1050: Q453_0526
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Entry
Q453_0526 CDS
T02927
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mhv
Mesomycoplasma hyorhinis DBS 1050
Pathway
mhv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q453_0526 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhv03019
]
Q453_0526 (rnr)
03016 Transfer RNA biogenesis [BR:
mhv03016
]
Q453_0526 (rnr)
Enzymes [BR:
mhv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Q453_0526 (rnr)
Messenger RNA biogenesis [BR:
mhv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q453_0526 (rnr)
Transfer RNA biogenesis [BR:
mhv03016
]
Prokaryotic type
tRNA degradation factors
Q453_0526 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD
S1CSD-TOTE-2
S1_2
Motif
Other DBs
NCBI-ProteinID:
AHA41251
LinkDB
All DBs
Position
complement(568193..570277)
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AA seq
694 aa
AA seq
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MQINNEQLFAFLKQPKSFIEIARKFNITFNENAQLSSYLSHLLESHLIFKNHKGLYFSPK
ILSSHIGVFHSTQKGFGFVELKDHQNSVFIPAKFTSSAQDYDEVKINVFQDELKPDKTYG
VVTKVISRKLKFLIGKVIKNGDYFDFEPYNSFKNEVFFRWVSTKNLVLGEFVKVEILEYQ
KKFLKIALVQNIANENEKFWYLKVPIVDSGVEVEFNSNIEEELKQIPDAIETIEPNRVDL
RSSTIVTIDGDDTKDFDDAISVEKLENNNYKLGVHIADVSYYVKEDTFLDDEAATRGTSI
YLPNMVIPMLPEKLSNGICSLNPNVDRYTITMEAEIDKYGNNLSVKIYPSVINSKARLTY
NQVNKYYENQEISFTNEVKLLLDDALELAKILRKYKENQGYVNLEIEETKVILDEEGYTK
DLQIKKSGISEALIEDFMVRANENVSEFLAKRKFPVIYRIHDKPDIERIEEFNGVLKSLG
VNVVIPYQLDSKSFADAVEKIKEQRLDNFIKIMILRTMQKAVYSPVNHGHFGLASKFYSH
FTSPIRRYPDLLLHRIIRHFLFEHKKDLLHFERILEFQSKSTSELEQRAQTLERKVVSIK
KTEYFSSRIGQKYRGQITSIKKFGFFVELENNVDVLVHISDLQTNEQEEFILSDDSFTLA
NKFYKYQLGQFVEVEILSIDIPFGKISAKVVLKN
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattaataatgaacaactctttgcttttttaaaacaacccaaaagttttatcgaa
attgcaagaaaatttaatatcacttttaacgaaaatgcccaattatctagttatttatca
catttactagaatcacatttgatttttaaaaatcacaaaggcctttattttagtccaaaa
atattaagttcgcatattggagtttttcactccacacaaaagggatttggttttgttgaa
ttaaaagatcatcaaaattctgtttttattcctgcaaaatttacttcttcagcacaagat
tatgatgaagttaaaattaatgttttccaagatgagttaaaaccagataaaacttatggc
gtggttactaaagtcatttctcgtaaacttaaatttttaattggaaaagtcataaaaaac
ggtgattattttgattttgaaccatataatagcttcaaaaatgaagtgttttttagatga
gtgtcaactaaaaacttagttttaggtgagtttgtaaaagttgaaatccttgaatatcag
aaaaagtttttaaaaatagctttagttcaaaatattgcaaatgaaaatgaaaaattttga
tatttaaaagttccaattgtagactctggtgttgaagtggaatttaattcaaatattgaa
gaagaattaaaacaaattccagatgcaattgaaacaattgaaccaaatagagttgatttg
agatcttctactattgtaactattgatggagatgatacaaaagactttgatgatgcaatt
tcagttgaaaaacttgaaaataataattacaaattaggtgtacacattgctgatgttagt
tattatgttaaagaagatacttttttagatgatgaagcagcaacaagaggaacatctatt
tatttacctaatatggtaattccaatgcttcctgaaaaattatcaaatggtatttgttca
ttaaatcccaatgtggatagatatacaattacaatggaagctgaaatagataaatatgga
aataatcttagtgtaaaaatttatccttcagttattaattccaaagctagattaacttac
aatcaagttaataaatactatgaaaatcaagaaattagctttacaaatgaagtaaaatta
cttttagatgatgctttagaattagctaaaattttaagaaaatacaaagaaaatcaaggt
tatgtaaatcttgaaattgaagaaacaaaagttattttagatgaagaaggatacacaaaa
gatttacaaattaaaaaatcaggaatttctgaagctttaattgaagattttatggtaaga
gcaaacgaaaatgtttctgaatttttagcaaagagaaaatttcccgttatttatcgtatt
catgacaaacctgatattgaaagaattgaagaattcaatggagtattaaaatcattagga
gttaatgttgtaattccttatcaattagattcaaaatcttttgctgatgcagttgaaaaa
atcaaagaacaaagacttgataattttattaaaataatgattttaagaacaatgcaaaaa
gcagtgtattcgccagttaaccatggacattttggtttggcttcaaagttttatagccac
tttacaagtccaattcgtagatatccagatcttcttttacatagaataattagacatttt
ttgtttgagcataaaaaagatttgcttcattttgaaaggattttagaatttcaatctaaa
agtacttcagaacttgaacaacgtgctcaaacattagaaagaaaagtagtttctattaaa
aaaacagaatatttttcttcaagaataggccaaaaatatcgcggtcaaattacttcaatt
aaaaagtttggtttttttgttgaattagaaaataatgttgatgtattagttcatattagt
gatttacaaacaaatgaacaagaagaatttatactttctgatgatagttttactttggca
aataaattttataaatatcaattaggtcaatttgtagaagttgaaattttaagtattgat
attccttttggtaaaatttctgccaaagtagtattaaaaaactaa
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