KEGG   Megasphaera hexanoica: ACT01_00575
Entry
ACT01_00575       CDS       T05536                                 
Name
(GenBank) helicase RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
mhw  Megasphaera hexanoica
Pathway
mhw03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mhw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    ACT01_00575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mhw03400]
    ACT01_00575
Enzymes [BR:mhw01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     ACT01_00575
DNA repair and recombination proteins [BR:mhw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     ACT01_00575
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 SH3_13 OB_YrrC UvrD_C_2 Viral_helicase1 AAA_11 HHH_5 NAT10_TcmA_helicase UvrD-helicase PIF1 AAA_22 PhoH AAA_12 Herpes_Helicase DEAD nSTAND3 NTPase_1 T2SSE AAA_16 NPHP3_N SLFN-g3_helicase AAA_28 TrwB_AAD_bind HHH_2 cobW UvrD_C HVO_0513_N NACHT AAA_5 HHH_3 ATP-synt_ab KTI12 FtsK_SpoIIIE AAA RecD_N ABC_tran RsgA_GTPase Flavi_DEAD Thymidylate_kin ATPase_2 nSTAND_NTPase5 AAA_29
Other DBs
NCBI-ProteinID: AXB80859
LinkDB
Position
complement(121485..123650)
AA seq 721 aa
MIKENNTLQGVVERILFEAPDSDYLVFRLRREDDDSVVTVTGNGSKPLVGDRLEVQGRWT
EHRRYGRQYQAGCWKRLVPDTEEGMERFLASGAVKGIGPSLAHRIVEAFGSGAMEVLEKE
PQRLLEIEGIGRKKLADITDSFRKEKEVNDIALCLETHGISGRFASRLVQKYGSDTQYVL
EHEPYRMILEIEGIGFKTADQMALAFGLDPSSEERLVAGMTYVLSEMTGNGHVCIPDTEL
IRRTASVLRADSLQLRNILEEALDIGQLISADYGGGTYIYMPEMHDEECDIARRIQYMSE
MKPLPVHTPVQLFLDRWQDICHFELAEKQREAVEASLQSGLLVITGGPGTGKTTVVQTII
SLAEQEQLRIILCAPTGRAAKRLSETTERKALTIHRLLVPMGFHGRMQIFEYNETNLLKA
DLVIVDEVSMLDMSLMYHLFQALPPSCRVILVGDADQLPSVGAGSVLHDIIRSGCVSVIR
LDTIFRQREGGRIVTNAHLINYGRMPVVNEDEEFRFITIDSESQGAEIISQLYESETSET
GDKFAVQVLSPMYRQDCGVDHLNALIQEKTNPPSQGKTELKNGHTLYRTGDKVMQKQNDY
EKGVFNGDIGEVFAVTDKIVYVRYPEHDVKYEGPELDEITLAYAITVHKSQGSEYQVVIM
ALVNSHAIMLQRNLLYTAVTRAKRKVILVGTKRALERAVENVRTSQRHTLLAERIRREEI
T
NT seq 2166 nt   +upstreamnt  +downstreamnt
atgataaaagaaaacaatacattacaaggtgtcgtggaacgcattttgtttgaagcaccc
gattcggattatcttgtattccgcctgcgccgtgaagatgatgattctgtcgtcactgtg
acgggaaatggcagtaaacctttggtaggtgaccggctggaggtccaggggcgatggaca
gagcaccgacggtatggcagacagtatcaggccggttgctggaaacgcctggttcccgat
acggaagaggggatggagcggttcctggcatcaggggctgtcaaggggataggcccgtct
ctggcacatcgcatcgtggaagcttttggcagcggggctatggaggtattggaaaaagaa
ccgcagcgtctcctggaaatagagggcattggcagaaagaaactagcagatataacggat
tcgttccgtaaagagaaagaagtaaatgacattgctctttgcctggaaacacacggtatt
tccggccggtttgcctcacgtctggtacagaaatatggcagtgatactcaatatgtactg
gagcatgaaccgtaccggatgattctggaaatcgaagggatcgggtttaaaacggcagat
cagatggcccttgccttcggactggatccgtcttccgaggaacggctggtagcaggtatg
acctatgtgctttctgaaatgacgggaaatgggcacgtttgtatacccgatacggagttg
atccgccggacggcctctgtcctgcgggcggattctttgcaattacggaatatcctggaa
gaagcccttgacatcggccaattgatatcggctgattatggtggtggaacctatatttat
atgccggaaatgcatgacgaagaatgcgacatagccagacggattcaatatatgtctgaa
atgaagcctttgcctgttcatacgccggttcaactatttttagaccgctggcaggatatc
tgccattttgaactggcagaaaaacagagagaagccgtcgaagcgtcgttgcagtcggga
ttattggtcatcactgggggaccgggaaccgggaagacgacggttgtgcagactattatc
agtctggctgaacaggaacaattgcgtatcattttatgcgcgccgacgggccgggctgcc
aaacgcctttctgaaacgacggagcgaaaggcactgacgattcaccgcctgctggtccct
atggggttccatggccgtatgcagatatttgaatataatgaaacgaatcttctcaaagca
gatctggtcatcgtcgatgaagtatcgatgctggatatgagcctcatgtatcaccttttc
caggcacttccaccatcttgccgcgtcattctggtcggcgatgccgatcaacttccttct
gtgggggccggatctgtcctgcacgatattatccgttccggatgcgtatccgttatccgt
ctggacacgattttccgtcagcgggaaggcggccgcatcgtaaccaatgcccatctgatt
aattacggccggatgcctgttgtcaatgaagacgaggaatttcgctttattacgattgac
agcgaaagtcagggagcagaaatcatcagccagttatatgaatcggaaacgtctgagacg
ggggataagtttgccgtgcaagtgttatctcctatgtaccggcaggattgcggcgtcgat
catctgaatgccctcatacaggaaaagacgaatcctccgtcacagggaaagacggaatta
aagaatggacataccttataccgcacaggcgacaaagtcatgcagaagcaaaatgattat
gaaaagggcgtattcaatggtgacataggcgaagtatttgctgtaacggacaagatcgta
tatgttcgttatccagaacacgatgtcaaatatgaagggccggaactggatgaaataacg
ctggcctatgccattacggtccataaaagccagggaagcgagtatcaagtcgtcattatg
gcattagtcaatagtcatgccatcatgcttcagcggaacctcctgtatacggcagtaacc
agggctaaacgtaaggtaatcctggttgggacgaaacgggcgttagaaagagctgtagag
aacgtgcggaccagtcagcgccatacactgctggcagagcggatacgccgggaagaaatt
acatga

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