Megasphaera hexanoica: ACT01_03735
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Entry
ACT01_03735 CDS
T05536
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mhw
Megasphaera hexanoica
Pathway
mhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACT01_03735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhw03019
]
ACT01_03735
Messenger RNA biogenesis [BR:
mhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACT01_03735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
SrfA
Motif
Other DBs
NCBI-ProteinID:
AXB81420
UniProt:
A0A848BVT1
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Position
808413..810074
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AA seq
553 aa
AA seq
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MAKKEKLLVIPLGGLGEIGKNMTVIQYGDDIVVIDAGLAFPDDDMFGIDLVIPDMSYLIE
NKDKVRAIVITHGHEDHIGSLSYLLNEVNAPVYATKLVCGLIEGKLKENHITNYQLNEVH
HGDEVQIGCMKVGFIHTNHSIPDASALYFRTPVGTIVHTGDFKMDLTPVDGLPMDIHKFA
DLGRRGVLLLMSDSTNAERPGYTESETTVSVAFRKAFGEAKGRIILATFASNISRIQQAI
NTAVLFKRKVTVLGRSMVNNVQIAIDLGYLEVPDGVLIEPDELNRYPADQVLILTTGSQG
EPMAGLSRMASNNHRSVSIMPGDTVIISATPIPGNETGVGRTIDNLMKLGATVIAGRDKR
MHVSGHASQEELKIMLSLIKPKYFIPVHGEYRMLRKHGELAVQMGVAKDHVLIGDNGQIF
EFSNRSGHKTGHVNAGRVFVDGLGVGDVGNIVIRDRQQLAMEGVVIVVMTLAKGTSHALA
GPDIVSRGFVYVRDSEELMREAHEKVAAVLERCEAGNIREWAVIKSQVRDTLSRYLYEKT
RRRPMILPIIMEV
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
ttggctaagaaggaaaaacttcttgtaattcctctgggaggcctgggtgaaatcggtaag
aacatgaccgttatccagtacggcgatgatattgttgtcatcgatgccgggctggcattt
cctgacgatgacatgttcggtatcgacctggtcatccccgacatgagttacttgattgaa
aacaaagataaagtacgggctattgtcattacgcatggtcatgaagaccacatcggcagc
ttatcctatctgctgaatgaagtgaatgcgcctgtatacgcgacgaaactcgtctgcggt
ctcattgaaggaaagttaaaagaaaatcatattacaaattatcagttaaacgaagtgcat
catggagatgaagtgcagatcggctgtatgaaggtggggttcattcatacgaatcattcc
atccccgatgcgagcgctctctacttccgtacgcctgtaggtaccattgtccatacgggt
gacttcaagatggacctgacaccggtagacggactgcctatggatatccacaaatttgcc
gacctgggccgccgcggcgtactgcttctcatgtcagacagtaccaatgcggaacggccg
gggtatacggagtcggaaacaaccgtcagtgtcgccttccgcaaagccttcggcgaagcg
aaaggccggattatcctggcgacatttgcatccaacatttcccgtatccagcaggctatc
aatacagccgtactgttcaaacggaaagttactgtcctcgggcgcagcatggtcaataac
gtgcagattgccattgatctgggctacctggaagtaccggacggcgtgctcatcgaaccg
gatgaactgaaccgctatccagccgatcaggtgcttatcctgacgacgggcagccagggc
gaacctatggccggcctgtcccgtatggcatctaataatcaccgcagcgtcagcatcatg
cccggtgatacggttattatctcggcaacgccgattccaggcaatgaaaccggtgtgggc
cggactatcgataacctgatgaagctgggcgctacggtcattgccggtcgggataaaaga
atgcatgtttccggccatgccagtcaggaagaattgaagatcatgctcagcctgatcaag
ccgaaatacttcatccctgtccatggtgaataccgcatgctgcggaaacacggggaactg
gccgtacagatgggagtggcgaaagatcacgtcctcatcggcgataacgggcagattttc
gaattctccaaccgttccggccataagacgggccatgtcaatgccggacgcgtctttgtc
gatggcctcggcgtcggcgatgtaggtaatatcgtcatccgggaccggcagcagctggct
atggaaggcgttgtcatcgtcgtcatgaccctggcaaagggcacgagtcatgctctggca
ggcccggatatcgtatcccgtggatttgtctatgtccgggattcagaagaactcatgcgt
gaagcccacgaaaaagtagcagctgtactggaacgctgcgaagccggtaatatccgcgaa
tgggctgtcattaagtcgcaggtccgggatacgctgagccgctatctctatgaaaaaaca
cggcggcgtcccatgattctgcctatcatcatggaagtatag
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