Megasphaera hexanoica: ACT01_09470
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Entry
ACT01_09470 CDS
T05536
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhw
Megasphaera hexanoica
Pathway
mhw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACT01_09470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhw03400
]
ACT01_09470
Enzymes [BR:
mhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACT01_09470
DNA repair and recombination proteins [BR:
mhw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACT01_09470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
UB2H
SecA_DEAD
AAA_16
AAA_30
RecG_dom3_C
DUF3867
Motif
Other DBs
NCBI-ProteinID:
AXB82447
LinkDB
All DBs
Position
complement(1999910..2003197)
Genome browser
AA seq
1095 aa
AA seq
DB search
MNTFFQRMNEDANIHSCADLFIQPGCHSIYGVGGSVKTSFAARAVMAVGKPALIIVPSKE
QETAWQTDLQFFAADLPVYTFPLGDRAVFSTTAKSMERTARQMEVLAALCSHAFCAVVAT
IEEAAQFIAAPEHVNAAAFNVSAGQDYERETLLRRLADDGYERVDMVERRGHFSVRGDII
DVFAVNYEQPLRLEFFGDTLESLRFFDASSQKSLDKTDTVRILPFAIDGDKDKEHTILDY
LDEGVIIWDEPNRCRENLKKFLKESADYKEWLCSWRSLSGAERKGTQIVLSLMAQSVPDM
MIDSSASFSAKAMASFQKQFDLLHDELSHWQESGDAILFVLGSRQRIATLKSWFAQNGFS
VSAYEETIPLEASQIYLAEGEIRNGFELPYAKLVVISERDIYGMQKHRLRHHVQKGQEIN
VFTDLKAGDYVVHEVHGIGRYAGIKTIEIDGVHKDYLEIHYAGKDILYVPTDQLNLLQRY
IGNEGDTPKLHKMGGSDWQKTRAKAQKSITDLAEKLVAVYAKREIVPGFAFPPDTPFQKE
FEDAFPYEETEDQLKAVAEIKKSMEKPFPMDCLVCGDVGFGKTEVAMRAVFKAVMGGKQV
AVLVPTTVLAQQHFQTFTERFRNFGVNCDVLNRFRSQKEKKDILRRTLTGEIDVLIGTHS
LLNKRVKFKDLGLLVVDEEQRFGVAQKEKWKAWAAHIDVLTLSATPIPRTLHMSLVNLRQ
MCVIETPPTDRFPVQTYVTEYDARIVRDAVMREKHRGGQVFFVYNMVDSIEKMKDQLQAL
LPDLSIGIAHGQMAGTLLEQVMFDFYEGRYDILLCSSLVENGLDVANANTIIIYDADHFG
LSQLYQMRGRVGRSHRMAYAYFLYRRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLEI
RGAGNLLGREQHGNIASVGFAMYCSMLEKAIAKAQKGQSDELPPPETVMETHIDAFIDDA
YISNGGQKIEMYQRLATITDEKELNDLEKELLDRYGRPTRPVETLLHATRIRLTGRSLGL
TLIAQKRDTLELKWRSLQDMPPLAELTGPLRRRFRTVPGMPLMLRISLAGVEDILTFLDQ
IFASFNTVRKGNSLG
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaatactttttttcaacgcatgaacgaggatgccaatatacattcctgtgctgacttg
tttatccagcccgggtgccacagcatatacggtgtcggaggatcggtcaaaacgtcgttt
gccgcccgggctgtcatggctgtgggaaaaccggctctgatcattgtaccatcgaaagag
caggaaacggcctggcagacggatctgcagttctttgccgcggatttacccgtctataca
tttcccttaggggaccgggccgtattttcaacgacggcaaagagcatggaacggacagcc
cggcagatggaagtattggcagcactctgcagtcatgctttttgtgccgtcgtcgcgacg
atagaagaagcggcccagttcatcgcggcgccggaacatgtcaatgcagcagcgtttaac
gtatctgccgggcaggattacgaacgggaaacgctgctccggcgcctggcagatgacgga
tatgaacgggtcgatatggtcgaacggcggggccatttttctgtgcgcggtgatattatc
gatgtatttgccgtaaactatgaacagccgctccgtctggaatttttcggcgatacattg
gaaagcctgcgcttttttgatgcgtcgagccagaaatccctcgataagaccgatacggtc
cgtatccttccttttgctatagatggcgataaagacaaagaacatacgatcctcgattat
cttgacgaaggcgttattatctgggatgaacccaaccgctgccgggaaaatttaaagaaa
ttcctgaaagaaagcgccgattacaaagaatggctctgttcatggcgatctctgtccggt
gcagaacgaaaggggacacagattgtcctgtctctcatggctcagtccgtaccggatatg
atgatagattcgtcggcaagcttttctgccaaggccatggccagtttccagaaacagttt
gacctgcttcacgatgaactttcgcattggcaggaaagcggcgatgcgattctttttgta
ctcggcagccgccagcggattgcgacgctgaaaagctggtttgcccagaacggattttcc
gtttctgcatacgaagaaacgataccccttgaggccagccagatttacctggcagaaggg
gaaatacgaaatgggttcgaactgccttatgccaagttagtcgtcatatctgaacgggat
atttacggcatgcagaagcaccgcctgcgccatcacgtgcagaaagggcaggaaatcaac
gtatttaccgatctcaaagccggcgattatgtcgttcatgaagtccacggcatcggccgc
tacgccggcatcaagaccatagaaatcgacggcgtccataaagattatctggaaatccat
tatgccggaaaagatatcttgtatgtcccgacggaccagcttaatctgctgcagcgttat
atcggtaatgaaggtgatacgccaaaactgcacaagatgggtggcagtgactggcagaag
acacgggcaaaggcgcagaaatcgattacggacctggcggaaaaactggttgcagtctat
gccaagcgtgaaatcgtcccaggatttgctttcccgccggatacgccgttccagaaagaa
tttgaagatgccttcccctatgaagaaacggaagatcagctgaaagccgtagcagaaatc
aaaaagagcatggaaaaaccattcccgatggattgtcttgtctgtggcgatgttggtttt
ggcaagacggaagtcgccatgcgggccgtattcaaagccgtcatgggaggcaaacaggtt
gcggtcctcgtcccgacgacagttctggcccagcagcatttccagacttttacggaacgg
ttccgtaattttggtgtcaactgtgatgttctcaaccggttccggtcacaaaaggaaaag
aaggacatcctgcgccggacgctgaccggagaaatcgatgtccttatcgggactcatagt
ctgctcaataaacgtgtgaaatttaaagatctgggattgcttgtcgtcgatgaagaacag
cgttttggtgtggcccagaaagaaaaatggaaagcctgggcagcccatatcgatgtgctg
actctgagcgcgacgccgataccacgtacgcttcatatgtccctggtcaatctgcgccag
atgtgtgtcatcgaaacgccaccgacagaccgtttccccgtccagacctatgtcaccgaa
tacgatgcccgtattgtccgtgacgcggtcatgcgggaaaagcaccggggcgggcaggta
ttttttgtctacaacatggtagattccatcgaaaaaatgaaagaccagcttcaggcatta
ctgccggatttatctatcggcatcgcccacggccagatggccgggacactgttggaacag
gtcatgttcgacttttatgaaggccgctatgatattctcctgtgttccagcctcgtcgaa
aacggtctggatgtggccaatgccaatacgatcatcatctatgatgcggaccatttcggc
ctgtcccagctgtatcagatgcggggccgtgtcggccgcagtcatcgcatggcctatgcc
tatttcctgtaccgccgggataaagtcctgtcggaagtggcagaaaaacgtcttcaggca
attaaggaatttaccgaactgggctcagggtttaaaatagccatgcgcgatttggaaatc
cgcggtgccggcaatctcctgggacgggaacagcatggcaatattgccagtgtcgggttt
gccatgtactgcagcatgctggaaaaagccatcgccaaagcccagaaaggacagagcgat
gaactgccgccaccggaaacggtcatggaaacgcatattgatgcctttatcgatgatgcc
tacatcagcaacggtggacagaagatagaaatgtatcagcgtctggccactattaccgac
gaaaaagaattgaatgatttggaaaaagaactactggaccgctacggtcgtcctacccgt
cccgtagagacgctgctccacgcgacgcggatccgtcttacgggacgcagcctgggcctt
acactcatcgcacaaaaacgggacacgctggaattgaagtggcgcagcctgcaggatatg
ccaccgctggcagagctgacagggccgctgcggcgccggttccgtacggtaccgggtatg
cccctaatgctgcggatcagtcttgccggggtagaagatatcctgaccttcttagatcag
atttttgcgtctttcaacacagtgagaaaggggaattcccttggctaa
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