Mannheimia haemolytica M42548: MHH_c03540
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Entry
MHH_c03540 CDS
T02635
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, subunit beta' RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhx
Mannheimia haemolytica M42548
Pathway
mhx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MHH_c03540 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhx03021
]
MHH_c03540 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhx03400
]
MHH_c03540 (rpoC)
Enzymes [BR:
mhx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MHH_c03540 (rpoC)
Transcription machinery [BR:
mhx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MHH_c03540 (rpoC)
DNA repair and recombination proteins [BR:
mhx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MHH_c03540 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGK00842
LinkDB
All DBs
Position
complement(321962..326245)
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFMDAEERWGDEFEAK
MGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKITKRLKTLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLENRGIASTIKAAKKMVEREDPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRVTEYEKNEAGELEAKTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEA
EVAEIQEQFNGGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTDEVLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKEGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDSNGKDILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEAGI
AVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtgaagtttttaaaagcacaaacaaaatcgaacgaagattttgatgtg
attaaaattggtttagcatcaccggacaagatccgttcttggtcttttggtgaagtgaaa
aaaccggaaaccattaactatcgtaccttcaaaccggagcgtgatggtttattctgtgca
cgtattttcgggccggtaaaagattacgagtgcttgtgtgggaaatacaaacgtttaaaa
caccgtggcgtaatttgtgaaaaatgtggtgttgaagtaacccaaactaaagtacgtcgt
gagcgtatggggcacattgaattagcttgccctgtcgcacacatctggttcttaaaatca
ctaccgtcccgtatcggtttaatcttagatatgccgttgcgtgatattgaacgtgtgctt
tattttgaatcttatgtagttactgaaccgggaatgaccgatttagagaaaaatcagtta
ttaaccgaagaacaatttatggacgctgaagagcgttggggtgatgaatttgaagcgaaa
atgggtgcagaaggtatccaagcattacttcgtgatttagatttagaacaccaatgcgaa
accttgcgtgaagagttacaagaaaccaattcagaaaccaagcgtaaaaaaatcactaag
cgtttaaaaaccttagaagcattcttacaatccggcaacaaaccggaatggatggtgatg
acagtattaccggtacttccaccggatttacgtccgttagtaccgcttgacggtggacgt
tttgcgacttctgacttaaacgatttataccgccgtgtaattaaccgtaacaaccgttta
aaacgcttgttagatttagttgcaccggacatcatcgtgcgtaacgaaaaacgtatgtta
caagagtcggttgatgcgttattagacaacggtcgccgtggtcgtgcgattaccggttcg
aacaaacgtccgttaaaatctttggcagatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgtagattactcaggtcgttcggtaattaccgtaggccca
tacttacgcttacaccaatgtggtttaccgaagaaaatggcgttggaattattccgtccg
tttatctactcaaaattagaaaaccgtggcattgcttcaactattaaagccgcgaagaaa
atggtagagcgtgaagatcctatcgtatgggatattcttgccgaagtgattcgtgaacac
ccgattctacttaaccgtgcaccaacacttcaccgtttaggtatccaagcgtttgagccg
ttattgattgaaggtaaagcgatccagttacacccactcgtgtgtgcggcgttcaatgcg
gacttcgacggtgaccaaatggcggttcacgttccattaacccttgaagcacagttagaa
gctcgtgcgttaatgatgtcaaccaacaacgtactttcaccggcaagtggtgatccgatt
atcgtaccgtctcaggacgttgtactcggtctttactatatgacccgtgagaaagtaaac
ggtaaaggtgagggaatgtacttccttgaccctcgtgaagcggaaaaagcataccgtacc
ggtcaggctgaattacattctcgtgttaaagtgcgtgttactgaatatgagaaaaacgaa
gcaggcgaattagaagcaaaaacttcgttagtagataccaccattggtcgttcaatctta
tggatgattgcaccaaaaggtatgccgtttagcttgttcaaccaaaccttaggcaaaaaa
gcgatctcgaaattaattaacgagagctatcgccgtttaggtttaaaagaatctgtggtt
ttagctgaccaaattatgtacaccggctttgcttatgctgctcgttctggtgcctcagta
ggtatcgacgatatggtaattccggagcaaaaatacgcaatcattgaagcggctgaagcg
gaagtcgctgagatccaagagcaattcaacggcggtttagtaacagccggtgagcgttat
aacaaagtgatcgatatttgggctgctgcaaacgaacgtgttgcgaaagcaatgatggaa
aacctttcaacggaagaagtaatcaaccgtgaaggtaatccggaaaaacaagcctcattt
aacagtatctttatgatggcggactccggtgctcgtggttctgctgcacagattcgtcag
ttagcgggtatgcgtggcttgatggctcgtccggacggttcgattatcgaaaccccaatt
actgcaaacttccgtgaaggtttgaacgtattacagtactttatttcaacccacggtgca
cgtaaaggtcttgccgatacggcattaaaaacagcgaactccggttacttaacccgtcgt
ttagttgatgtggcacaagatttagttatcattgaagatgactgtggtacgcacgaaggt
atcgtgatgacaccacttatcgaaggtggtgatgtgaaagaagccctgcgtgatcgtgta
ttaggtcgtgtggtggcagaagatgtgttaaaaccgggtacagatgaagtattaattcca
cgcaacaccttattagatgaaaaatggtgtgatgtggtggatcgtgaatctgtggatgtg
atcaaagtacgttcggtagtaacttgtgatacagacttcggtgtgtgtgctaaatgttac
ggacgtgacttggctcgtggtcacttaatcaaccaaggtgaagcggtcggtgttattgcg
gcacaatctatcggtgagccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcttctgcggcagcaaaagaatctagcatccaagtgaaaaacgcaggtacgattaaa
ttaaccaacgctaaatttgtaaccaacaaagaaggcaaaatcgtattaacttctcgtaat
actgaattaactgtcatcgacaccttcggtcgtaccaaagaaaactataaagtgccttat
ggtgcggtgctttctaaacacgacggtgcagaagtggctgtgggtgaagtggttgcgaac
tgggatccgcacacaatgccggtaatctcagaggtatcaggtcgtatccaatttagcgac
atcgtagatggcttaaccgttactcgccaaaccgatgaattaaccggtttatcatctatc
gtggtgcaagatgtgggtgaacgtgcaaccgcaggtaaagatttacgtccggcattacgc
ttagttgatagcaacggcaaagacatcttaattccgggtacagacgttgcagcacaatac
ttcttaccgggtaaagcaatcgtaaccttagacgatggtgcagaaattgaagtcggtgaa
gccttagcccgtattccacaagaatctgtggggacgaaagatattaccggtggtcttcca
cgcgtagcagacttattcgaagcccgtaaaccgaaagagccggcaatcttggcggaaatt
tcaggtattgtgtcgttcggtaaagaaaccaaaggtaaacgccgcttggtaattactccg
gcggaaggcgaagcgtttgaagagatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgagatggtacaacgtggtgatgtgatatcagacggtgcagaaactccgcacgacatc
ttacgcttacgtggcgttcacgccgttaccgactacatcgtaaacgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaacgacaagcacatcgaagtgattgttcgccaaatg
ttgcgtaaagctgtgatcaccaacgcttacgactctgaattcttagagggcgaacaagtg
gaagtggctcgtgtgaaaattgccaaccgcaaacgtgctgaagaaggcaaaccgttggta
gaatttgaacgtgaattgcttggtattaccaaagcatctcttgcaacagaaagctttatt
tctgcagcctcgttccaagaaaccactcgagtgcttaccgaagccgcagtggcaggtaaa
caagatgaattgcgtggcttaaaagagaacgtaatcgttggtcgcttaatcccggcaggt
accggttttgcttaccaccaagcacgagctaaaaaacgtgcccaactggaagcaggaatt
gcagttgtccctgaatttgaagcaccggcagctaaagccaattcattcgttaccgatgca
gacatcgaagctgaatttgaatttgttgcagacgatgcaacccaaagtttagcagcgttg
ttaaatgcgggtgaggaagagtaa
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integrated database retrieval system
