Mesomycoplasma hyopneumoniae 232: mhp635
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Entry
mhp635 CDS
T00206
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhy
Mesomycoplasma hyopneumoniae 232
Pathway
mhy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
mhp635 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhy03021
]
mhp635 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhy03400
]
mhp635 (rpoC)
Enzymes [BR:
mhy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
mhp635 (rpoC)
Transcription machinery [BR:
mhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
mhp635 (rpoC)
DNA repair and recombination proteins [BR:
mhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
mhp635 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AAV28002
UniProt:
Q5ZZS2
LinkDB
All DBs
Position
complement(793670..797908)
Genome browser
AA seq
1412 aa
AA seq
DB search
MNTKVSRQYAKISENSIQKISLALATPEDVLEWSRGEVHRPETINYKTFKPERGGLFDEL
IFGPLVDYKCSVCGRKYRKSNENQLCIATKECKIRGSRILSKMARRYSMGHIALNAPILH
FWFFKIDHSIIAKLLGLKVFEGNSKVPTTITKTAIENLIYYKSHIVLETGGLKSLEQNKI
IDISEAGLIYKNALIEIIEFYPPGSEEHNALAESISELADVTSSKIGREYGVDYYELNEI
IEEFSSARIATGALAIEYLLDKIDLRAEKAAVEAELAGVQKQIYKNKKIILKNQKRDKLY
KRLQVINAFINSGQDPKMMIIRNLPVIPADLRPLVQLDGSRHSTSDCNELYRRIIIRNNR
LKRWKAAHAPVIIIQNEMRMLQEAVDALIDNQKKSTNQVTTKEGRPLKSISDALTGKKGR
FRQNLLGKRVDYSGRSVIVVGPKLKMHQAGLPRKMAAVLFEPWIIRNLIQEKKVGSIKMA
RKMIEEENPIIWPHVAKVIQNKPIILNRAPTLHRLSIQAFEPVLVRAKAIQLHPLVTAGF
NADFDGDQMAVHIPISPEAIRETQELMFADKNILGPKDGEPIVNPSQDMVLGLYYLSQEK
AGAKGEGSFFSTYEAMLKAYEFRSVELHARVVLPFEQVKPFIAKTMRGHLISTVGKFILN
NIFPANFPFIFDDNVDELELNYPSQIKKYVLPYGTNFREYIQNLKVNEPLNKKAIAKIVR
QIFDTYDGLLAKEDIATVIDQLDFGNYQNRVLLYEKLRDYKKQKLPVPHLSKLSEFTIFE
YSQLYKQLQQNGPVESYRVLEDHEKAELLEKIWFKYNNMVCSILDKIKDLGFHYSTLSGT
SIAISDIKMAPKKHEFIKDGENYINKLNTFYAKGLITDDERYVLAIAKWTQIKNDIQEDL
NQSIKDDNQNSLVMMMKSGARGNISNFVQLAGMRGLMANNVKALKVDAENERVVRSIVEV
PVKSSFLEGLTSFEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQNIVVVAEDCFSD
FGFVVKDIIDTKTNTIIVPLLERIEGRFLNKDVYDSRGIKLASAGSMVDLQTAKKIVAAG
IKKVEIRSILSCHIKNSVCKKCYGKDLATNRLVSIGEAVGIIAAQSIGEPGTQLTMRTFH
TGGVANVEDITGGFTRLIELIDSHEHPWGKPAKISPYYGIITKISDLAEKNAANKGFLIT
IEYKTSKNEKAEHIIRIEQSQKLRVKVGDKVIPGQKLVEGPIILKELLAVSDARTLQNYL
LKEIQRIYRMQGISISDKYIEIIIRQMLSKVQIIENGDSNFFIGSIVDISDYQEVNGQLI
SQNKNPAFGNVIVKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQIDKLEGLKENIIV
GHKIPAGTNSNYEPKSKFDIRNPLSFFMKNNR
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaagtttcgcgccaatatgcaaagatttccgagaattcaattcagaaaatt
tcccttgctttagcaactcctgaggatgtccttgaatgatcaaggggagaggttcatcgt
cccgaaacgattaattataaaacttttaagcccgagcgcggcggtctttttgatgagtta
atttttggtccacttgttgattataaatgttcagtttgtggaaggaaataccggaaatca
aacgagaatcagctatgtatcgctacaaaagaatgtaaaattcgtggatcacgaatttta
tcaaaaatggcccggcgttattcaatgggtcatattgctttaaatgcgccgattttacat
ttttgattttttaagatcgaccattcaattattgccaaattacttggccttaaagttttt
gagggtaattctaaagttcctaccacaatcactaaaaccgcaattgaaaatctaatttat
tataaatcacatattgtccttgaaactggggggcttaaatctttagaacaaaacaaaatc
attgatatttccgaagccggcttaatttataaaaacgccttaattgaaataattgaattt
tatcctcctggaagcgaggaacataatgccttagcagagtcaatttctgaattagccgat
gtaacttcaagtaaaatcggccgtgaatatggggttgattattatgaacttaatgaaata
attgaagaattttcaagtgctcgaattgcaacaggagcactcgcgattgaatatttgctt
gataaaattgatcttcgagctgaaaaagcggcagttgaagctgaacttgccggggttcag
aaacaaatttataaaaataagaaaattattcttaaaaatcaaaaaagagataaactttat
aaaagactgcaagtaattaatgcatttattaactctggtcaagatccaaaaatgatgata
attcgcaatcttccggtaattccagctgatttacgtccgttggttcaactagatggctcc
cgtcattcaacaagtgattgcaatgaattataccggagaatcattattcgaaataaccgt
ctaaaaagatgaaaagccgctcatgctcctgttattattatccaaaatgaaatgcgaatg
ctccaagaagccgttgatgctttaattgataatcaaaaaaaatcaacaaatcaagtaaca
accaaagaaggccgcccgcttaagtcaatttctgatgctctaactggaaaaaaaggaaga
tttcgccaaaatcttttaggaaaaagggttgattattctggaagatcagtaattgttgtt
ggcccgaaattaaaaatgcatcaagccgggcttcctcggaaaatggctgctgttcttttt
gaaccctgaattattcgcaatttaattcaggaaaaaaaagtaggctcaatcaaaatggca
aggaaaatgattgaagaagaaaacccaattatttgacctcatgttgccaaagtcatccaa
aataaaccaataattttaaatcgggccccaactttgcaccgcctttcaattcaagctttt
gaacctgttttagtcagagccaaagcgattcaattacatccgcttgtaaccgccggattt
aatgccgattttgatggtgatcaaatggctgttcatattccaatttctcctgaagctatc
cgtgaaactcaggaattaatgtttgcagataagaacattttaggcccaaaagacggagaa
ccaattgttaatccttctcaggatatggtgctcggactttattatttatctcaggaaaaa
gccggagcaaaaggggaaggatctttcttttcaacttatgaagcgatgctaaaagcatat
gaattccgaagtgttgagcttcatgcccgggttgttttaccttttgagcaggtaaaacct
tttattgccaaaactatgcggggacatttaatttcaacggtgggaaaatttattcttaat
aacattttcccggcaaattttccttttatttttgatgataatgttgatgaattagaacta
aattatcctagtcaaatcaaaaaatatgtccttccttatggaacaaattttcgcgagtat
atccaaaatttaaaggttaatgaacctttaaataaaaaagcgattgccaagattgtccgc
caaatttttgatacttatgatggtcttttagcaaaagaagatattgcaactgtaattgat
caacttgattttggcaattatcaaaatcgcgttttactctatgaaaaattacgtgactat
aaaaaacaaaaattaccagttccccatctttcaaaattaagtgaatttacaatttttgaa
tattcacagttatataaacaacttcaacaaaatggtccagttgagtcttatcgtgtccta
gaagatcatgaaaaagctgaacttttagaaaaaatttggtttaaatataataatatggtt
tgttcaattcttgataaaattaaggatttaggatttcattattcaactctttcgggaact
tcaattgcgatttcggatatcaaaatggcgccaaaaaaacatgaatttatcaaagatggt
gaaaattatattaataaattaaacactttttatgcaaaaggtttaatcaccgatgatgaa
agatatgttttagcaatcgctaaatgaacgcagatcaaaaatgatatccaagaagattta
aatcagtcaattaaagatgataatcaaaattcacttgtaatgatgatgaaatcaggggct
cgtggtaatatttctaactttgttcaacttgcaggaatgcgaggtttgatggcaaataat
gttaaagctcttaaagttgatgctgaaaatgaaagggtagttcgttcaattgttgaagtt
ccagttaaatcatctttccttgaaggtcttacctcttttgaattttattcttcaacccat
ggggctagaaaaggacttacagatacggcacttaatacggcaaaatcgggatatttaact
cgtcggctcgtcgatgttgcccaaaatattgtcgttgttgccgaagattgtttttctgat
tttggctttgtcgtcaaagatataattgatactaaaacaaatacgataattgttccttta
ctagaaagaatcgaaggtcgctttttaaataaagatgtctatgactcccggggaattaaa
ttagcaagtgcgggttcgatggttgatttacaaacagcaaaaaaaattgttgctgctggt
attaaaaaagtcgagattcgttcaattttatcctgccatatcaaaaatagtgtctgcaaa
aaatgttatgggaaagatttagcaacaaatcgacttgtttcaatcggcgaagccgtcgga
attatcgctgctcaatcgatcggagaacctggaacgcagttaacaatgcgtactttccat
accggtggggttgctaatgttgaagatattacagggggatttacccgtttaattgaatta
attgactcgcatgagcatccttgaggtaagccagcaaaaatttcgccttattatggtatt
ataaccaaaatttctgatcttgccgaaaaaaatgcggcaaataaaggatttttaattact
atcgagtacaaaacaagcaaaaatgaaaaagctgaacatattatacgtattgagcaaagt
caaaaattacgtgtaaaagtcggagataaagtcattccgggacaaaaattggtcgaagga
ccaattattctaaaagaattactagctgtctctgatgctagaacactacaaaattaccta
ttaaaagaaattcaaagaatttatcgaatgcaaggaatttcgatttcagataaatacatt
gagatcataatcaggcagatgctttcaaaagttcagatcattgaaaacggtgattctaat
ttctttatcggatcgattgttgatattagtgattatcaggaagttaatggtcaactgatc
tcccagaataaaaatcccgcttttgggaatgtaatagtaaaaggagcaaaacaaattcct
cttctttcaaattcatttttagccgccgcgagttatcaggaaacctcaaaaatacttgtt
cattcagtaatttcttcccagatcgataaacttgaagggcttaaagaaaatattatcgtc
gggcataaaattccagccggaactaattcaaattatgaaccaaagtccaaatttgatatc
cgtaatccacttagtttctttatgaaaaataaccgttag
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