Microbulbifer hydrolyticus: GTQ55_03240
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Entry
GTQ55_03240 CDS
T06404
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mhyd
Microbulbifer hydrolyticus
Pathway
mhyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTQ55_03240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhyd03019
]
GTQ55_03240
Enzymes [BR:
mhyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GTQ55_03240
Messenger RNA biogenesis [BR:
mhyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GTQ55_03240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
CMS1
UvrD-helicase
DUF8086
Motif
Other DBs
NCBI-ProteinID:
QHQ38111
UniProt:
A0A6P1T8K6
LinkDB
All DBs
Position
769602..770981
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AA seq
459 aa
AA seq
DB search
MLFEDLGLAPEIARAVAEQGYTKPTPIQEQAIPVVMRGGDVMAAAQTGTGKTAGFTLPLL
HKLNAGERARNNQVRALVLTPTRELAAQVFDNVQSYSQHLPMRHSVVFGGVKINPQMMRL
RSGADILVATPGRLLDLYNQRAIKFDKLETLVLDEADRMLDMGFIHDIKKILRVLPPKRQ
NLLFSATFSPEIRTLAKGLVNDPVEIDVSPRNSTTKTVSQKLHPVDKSRKASLLCHLIKE
NGWHQALVFSRTKHGANRLAKQLEQSRIPAAAIHGNKSQNARTKALADFKSGKVQILVAT
DIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADEAKQLWDIEK
LIKKPIEREEIDGFEPDHQLPASGGKPGKGNQVRRGGAKPAARSGGNNSAGRSGKSDGQS
AGRGNGRGGNGSRGNGNGGNRSSAPSGNSGNRRRRPQSA
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgaagatctcggcctcgcgccggaaattgcccgcgctgttgcggagcagggc
tataccaaacccaccccgattcaggagcaggccattcccgtggtcatgcgcggtggcgac
gtgatggcggcggcacagaccggtaccggcaaaaccgctggctttaccttgcctctgttg
cacaaactgaatgccggtgagcgcgcgcgcaataatcaggtgcgcgccctggtgctgacg
ccaacgcgcgagctggcggcacaggttttcgacaacgtccagagctacagccagcacctg
cccatgcgtcactcggtggtattcggcggggtaaaaatcaatccgcagatgatgcgcctg
cgcagcggtgcggatatcctggttgctacaccggggcgcttgctggacctgtacaaccag
cgcgctataaagttcgacaagctggaaaccctggtgctcgacgaagctgaccgtatgctg
gatatgggcttcatccacgacatcaagaaaatcctgcgggtactgccgcccaagcgtcag
aacctgcttttctccgcgactttctcccccgaaatccgcaccctggccaagggcctggtg
aacgacccggtggagatcgatgtaagcccgcgtaacagcaccaccaagaccgtgagccag
aagctgcacccggtggataagtcccgcaaggcgtcgctgctgtgtcacctgatcaaggaa
aacggctggcaccaggcgctggtgttcagccgcaccaaacacggagccaaccgtctggcc
aagcagcttgagcagagccggattccggcggcggcgattcacggcaacaagagccagaat
gcacgcaccaaagccctggcagacttcaaaagcggcaaagtacagatcctggtagcgacg
gatattgccgcacgcggtatcgatatcgatcagttgccacaggtggtcaacttcgacctg
ccgaatgtgccggaagattatgtgcatcgtatcggccgtaccggccgtgccggtgccagc
ggccaggcggtttcgctggtttctgcggatgaggccaagcagctctgggatatcgagaag
ctgatcaagaagccgatcgagcgcgaagaaattgatggctttgagccggatcaccagctg
ccggcctctggcggtaaacccggcaagggcaatcaggtgcgtcgcggtggtgccaagccg
gcggcgagaagtggcggcaacaatagcgctggccgcagcggcaagagtgacggtcagtcg
gcgggtcgcggaaacggccgcggtggcaatggaagtcgcggcaatggcaacggtggcaac
cgcagcagcgcgccctctggcaacagcggcaatcgccgtcgtcgtccccagtccgcgtaa
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