Microbulbifer hydrolyticus: GTQ55_13680
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Entry
GTQ55_13680 CDS
T06404
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mhyd
Microbulbifer hydrolyticus
Pathway
mhyd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GTQ55_13680 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhyd03400
]
GTQ55_13680 (sbcB)
Enzymes [BR:
mhyd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GTQ55_13680 (sbcB)
DNA repair and recombination proteins [BR:
mhyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GTQ55_13680 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GTQ55_13680 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GTQ55_13680 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QHQ39930
LinkDB
All DBs
Position
complement(3181075..3182514)
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AA seq
479 aa
AA seq
DB search
MSGTTLYWHDYETWGVNPGADKPSQFAGIRTDEDLNVVGEPLMIYAKPASDCLPQPMAAL
VTGLAPQKALAEGLPEIEFIKRILEELGAPGTCGVGYNSLRFDDEVTRHTLYRNLLDPYE
REWKSGNSRWDIIDMVRLTYALRPEGIEWPQRETAAGETVPSFRLEELTAANGISHEGAH
DALSDVRATIDMARLIRERQPKLYDYVYNLRRKQEVAKILNPRDRKPLLHISGKVPATHG
HLTYVLPLAMHPVNRNAVICANLAMDPQPILDLDADALRERLYTARDKLGEGELPAGLKL
IHMNRCPVLAPANMLSDQRAADLQIDKAACEANWQALQGLDLTEKLHKVFLDGEFPAKDV
EARLYDGFMNDADRDLCRQLHSALGSRGPQALAGLVPFTDARLPELLFRLRARNFPETLN
EEEAERWEEWRYQRLTDPALGGSITMESYFEEIARLREEYPDRAALLDQLEAWGDALLG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtaccacgctttactggcacgattacgaaacctggggagtgaacccgggcgca
gacaagccctcccagttcgccggtatccgtaccgatgaagacctcaacgtcgtcggcgaa
ccgctgatgatctacgccaagcccgccagcgattgcctgccgcagccgatggccgcgctg
gtgaccgggctggcgccgcagaaggcgctggccgagggcctgccggaaattgaattcatc
aagcgcatcctcgaagagttgggtgcgccgggaacctgtggcgtgggctacaacagtctg
cggtttgacgatgaggtcacccgccacaccctgtaccgcaacctgctcgacccctatgag
cgcgaatggaagtccggtaacagccgctgggacatcatcgatatggtgcgccttacctat
gcgcttcgcccggaggggattgagtggccgcagcgggaaacggccgcgggtgaaaccgtg
ccctcgttccgcctggaagagctcaccgcggccaatggcatcagccacgagggtgcccac
gatgcgctgtccgatgtgcgcgcaaccatcgatatggcgcggctgatccgcgagcggcag
cccaagctgtacgactatgtgtacaacctgcgccgcaagcaggaagtggcgaaaatcctc
aacccgcgcgaccgcaagccactgctgcacatctccggcaaggtgccggcaacccacggg
catctgacttatgtgctgccactggccatgcatccggtgaaccgcaatgcggtcatctgc
gccaacctggccatggaccctcagccgatcctcgacctggacgccgatgccctgcgcgag
cgcctgtacaccgcccgcgacaaactgggtgagggcgagctgccggcgggcctgaagctg
attcatatgaaccgctgcccggtgctggcgccggcgaacatgctctctgatcagcgcgcc
gccgacctgcagatcgacaaagccgcctgcgaggccaactggcaggcgctacaggggctg
gacctgaccgagaagctgcacaaggtgttcctggacggggaatttccggcaaaagatgtg
gaagcgcggctctacgatggctttatgaacgacgccgatcgtgacctgtgccgccagttg
cacagtgccctgggcagtcgcggcccgcaggcgctggcggggctggtgccgtttaccgat
gcgcggttgcccgagctactctttcgcctgagggcgcgcaacttcccggaaacgctgaat
gaagaagaggcggagcgctgggaagagtggcgctatcagcgcctgacggacccagccctt
gggggcagtattaccatggaatcctacttcgaggagattgcccgcctgcgggaggagtat
cccgatcgtgcggcgctgctggaccagcttgaggcctggggcgatgcgctgttggggtga
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