Methanomethylovorans hollandica: Metho_0072
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Entry
Metho_0072 CDS
T02418
Name
(GenBank) TATA-box binding protein (TBP), component of TFIID and TFIIIB
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
mhz
Methanomethylovorans hollandica
Pathway
mhz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Metho_0072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mhz03000
]
Metho_0072
03021 Transcription machinery [BR:
mhz03021
]
Metho_0072
Transcription factors [BR:
mhz03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
Metho_0072
Transcription machinery [BR:
mhz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
Metho_0072
RNA polymerase III system
TFIIIB
Metho_0072
RNA polymerase I system
SL1/TIF-1B
Metho_0072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
RTT107_BRCT_5
DUF3502
FAM25
Motif
Other DBs
NCBI-ProteinID:
AGB48368
UniProt:
L0KWD3
LinkDB
All DBs
Position
78875..79426
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AA seq
183 aa
AA seq
DB search
MTDYNIKIENVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLVYRVSEPKAAFLVFTSG
KVVCTGAKNVADVHTVISNMAKKLNEIGIKTIKEPEITVQNIVASADLHAVLNLNAIAIG
LGLENIEYEPEQFPGLVYRIDKPKVVVLIFSSGKLVVTGGKTPENCAEGVEVVKQQLDSM
GLL
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattataatattaagatcgagaatgtggttgcttctacaaaacttgctgatgaa
tttgatttaaccaagatagaggcggaattcgaaggtgctgagtataataaacagaaattc
cctggtctggtataccgggtctctgaaccaaaggctgcattcctggtcttcacctctgga
aaggttgtatgtaccggtgccaagaatgtggctgatgttcatacagtaataagcaacatg
gccaagaagctcaatgaaattggtataaagaccataaaggaacctgagatcaccgtacag
aatattgtagcatctgcagatcttcacgctgtccttaaccttaatgcaatagctataggt
cttggtcttgagaatatagaatacgagcctgagcagttccccggacttgtataccgtata
gataaaccaaaagtggttgttcttattttcagttccggaaagcttgtggtaactggcggg
aaaacacctgagaactgtgcggaaggtgttgaagtagtgaagcagcagcttgatagtatg
ggacttctctaa
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