Methanomethylovorans hollandica: Metho_0446
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Entry
Metho_0446 CDS
T02418
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhz
Methanomethylovorans hollandica
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhz03016
]
Metho_0446
Enzymes [BR:
mhz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Metho_0446
Transfer RNA biogenesis [BR:
mhz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Metho_0446
Prokaryotic type
tRNA splicing ligases
Metho_0446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Phage-tail_3
Motif
Other DBs
NCBI-ProteinID:
AGB48713
UniProt:
L0KXB0
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All DBs
Position
440194..441654
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AA seq
486 aa
AA seq
DB search
MSEDNDISINLNKINDNTWEVPRGYKPGMRVPGRLFLSPPLLNILEQGTLDQVANVAALP
GIQKYSMAMPDAHLGYGFPIGGVAAFDREEGVISPGGVGFDINCGVRLIRSNLKESDVRP
GITDLLERLFHAVPSGVGSKSRLRVNDDQLDDVFIHGSRWAVENGYGVPNDVERCESQGM
MEGALVKQVSTRARQRGRPQLGTLGSGNHFLEIQYVDEIYDTKAADAFGLHEGQITFMIH
CGSRGAGHQICTDHLRTLTQAAEKYKIDLPDKQLACAPTDSSEAQNYFGAMVCAANYAWT
NRQVIMHWAREVFQDFFRQDMDELGMDLVYDVAHNVAKLETHKIDGKKREVYVHRKGATR
AFPPEHSDVPAAYKKVGQPVLIPGSMGTASYVLHGTHDAMDISFGSACHGAGRVMSRAHA
KHEFRGEQIQKDLSKMGISVRATQPALIAEEAPGVYKSSSDVVDVVHNLGIARKVARLMP
IGVVKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagataatgatatttcaattaatctcaataagatcaatgataatacctgggag
gtacctcgcggatataaaccagggatgcgtgttccaggacgcttgttcttatctcctccg
cttctaaatatactggaacagggcacactggatcaagtggccaatgtggctgcattacca
ggtatacaaaagtattccatggccatgccagatgcacatcttgggtatggtttccctata
ggcggagttgcggcatttgacagggaggaaggtgttatcagtccaggtggtgttggtttt
gacatcaattgtggtgtaaggctcatccgttctaacctgaaagaaagtgatgttaggcct
gggataacggaccttcttgaaagattgttccatgctgtgccttctggtgtgggctccaag
agccgtctgcgggtaaacgatgatcaactggatgatgttttcatccacggctcccgctgg
gctgtggagaatggctatggtgtacctaacgatgtggaaaggtgtgagagccagggtatg
atggaaggtgctctggtgaagcaggtcagcaccagggcgcgccaaagaggaagaccccag
ttgggaactcttggaagcggaaatcattttttggagatccagtacgtggatgagatctat
gacacaaaagccgctgatgcctttggcttgcatgagggacagatcacattcatgatccat
tgcggttcaaggggtgcagggcatcagatatgtaccgatcatctgcgcactcttacgcag
gcagcagaaaaatacaagatagatctccctgacaagcagcttgcatgtgcacctacggat
tcttccgaggctcagaactattttggagccatggtatgtgcagccaactatgcatggacc
aacaggcaggtaataatgcactgggcaagggaagtgttccaggatttcttccggcaggat
atggatgaactgggcatggaccttgtgtacgacgttgcacacaatgttgcaaaactcgag
acgcataaaatcgatggtaaaaagcgggaagtctatgtgcacaggaaaggtgctacacgt
gctttccctccagagcattctgatgtccctgctgcatataagaaagtgggccagcctgtg
cttatccctggcagtatgggcactgcttcatacgtactgcacggcactcatgatgcaatg
gatataagttttggtagtgcatgtcacggggctggcagggtcatgagcagagctcatgcc
aagcatgagttcagaggggaacagatccagaaagatctcagtaaaatgggaatctctgtt
cgtgccactcaacctgcactgatagctgaagaggctccgggggtctacaagtccagtagt
gatgtggtggatgttgtgcataatctgggcatagcaaggaaagttgcacgtctgatgcct
ataggagttgtaaaagggtga
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