Methanomethylovorans hollandica: Metho_1306
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Entry
Metho_1306 CDS
T02418
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mhz
Methanomethylovorans hollandica
Pathway
mhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metho_1306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhz03019
]
Metho_1306
03009 Ribosome biogenesis [BR:
mhz03009
]
Metho_1306
Enzymes [BR:
mhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metho_1306
Messenger RNA biogenesis [BR:
mhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metho_1306
Ribosome biogenesis [BR:
mhz03009
]
Prokaryotic type
rRNA helicases
Metho_1306
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGB49529
UniProt:
L0KZV7
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All DBs
Position
1299302..1300906
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AA seq
534 aa
AA seq
DB search
MTKFESFKAFNLSQSMLDVLEKKGFFKPTPIQIHVIPPLMKGDRDIIGQAQTGTGKTAAF
GIPIIEKLKANTGSIQALVLTPTRELALQVSLELESLKGDKDITVVPLYGGQTIKNQLKI
LKSGADIVVGTPGRIIDHLKKGNIKLDSISYLVLDEADEMLNMGFIEEVKEVFRSTNENK
QMLLFSATMPTPILKLAKKHMRNHDFVSVSQDDLIAEFTDQVYLELAEEQKFEALCRLID
INYGFYGLVFCNTKSDTIDISRRLTERGYAADALNGDLTQDQREGILKKFRTQGLNILVA
TDVAARGIDVLELTHVINYSLPQDAESYVHRIGRTGRAGKQGTAITFVTPADSRRFESFV
RTANADVRKEKLPSAKEVVTARTKNFKYDVGEIIKTGEYQDFLKMANELLDRHQASTVVA
SLLKYYFQNTLKEEHYPEPDADSSKADTGKIRLFVAIGDYEGMTPEKMPEFLSRESGIND
LQLETIEVFSKFSFITVSKNQADMLLKRFADMRKRNRPFVELAMNSNVRDNRKK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgactaaatttgagagtttcaaagcattcaatctatcccagagcatgctggatgttctg
gaaaagaaaggttttttcaagcccactcccatccagatacatgtgatccctcccctaatg
aaaggagacagggatattatcggtcaggcgcaaacaggtacaggcaagactgctgcattt
ggcatacccattattgagaaactgaaagcaaatacaggttccatacaggctttagtcctc
acccctacaagagaactggcacttcaggtgtctttagaacttgaatctctcaaaggtgat
aaggacattacagtagtgcctttatatggtggccagactatcaagaaccagcttaaaata
ttaaaatccggagccgacatagtggtaggtactccgggaaggattatcgaccatctgaaa
aaagggaacataaaactggattcgatctcctatcttgtacttgatgaagctgatgaaatg
cttaacatgggtttcatagaagaagttaaggaggtcttcaggagcacaaatgagaacaag
caaatgctgcttttctcagcaaccatgcccactcctatactaaagctcgctaaaaagcac
atgaggaaccatgactttgtttcggtgtcacaggacgacctcattgcagagttcactgat
caggtctacttggaacttgcggaagagcaaaagtttgaggctttatgcaggcttatagac
ataaactatggtttttacgggcttgtcttctgtaatactaaaagtgatacaattgacata
tcccggagactgactgaaagaggctatgctgctgatgctcttaatggggatcttacccag
gatcagagggaaggcattcttaagaagttcagaacccaggggctcaatattcttgtggct
acagatgtagctgcaagaggaatagacgtattggaactcactcatgtgatcaattattcc
ttacctcaggatgccgagtcctatgtccacaggataggccgcacaggcagagccggaaaa
cagggtactgcgatcacatttgttacccccgctgattcaagacggttcgaatctttcgta
agaactgcaaatgctgatgtcaggaaggaaaagctgccatctgcaaaagaggttgtaact
gcccgtactaaaaattttaaatatgatgtcggagagatcatcaaaaccggagagtaccag
gatttcctgaaaatggcgaacgaactgctggacagacaccaagccagtactgtggttgcg
tcccttcttaaatattatttccagaatactctgaaagaagagcattatcctgaacctgat
gccgacagttcaaaggcagatactggaaagatacgactttttgtagccataggcgattat
gaaggtatgacccctgaaaaaatgccagagttcctgagcagggaatcaggtataaatgat
ctgcaacttgagaccattgaagtgttctccaagttctcttttatcacagtttcaaaaaat
caggctgatatgctgcttaagagatttgccgatatgagaaaacggaaccggcccttcgtg
gaactggcaatgaacagtaatgtaagggataacaggaagaaataa
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