Methanomethylovorans hollandica: Metho_1884
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Entry
Metho_1884 CDS
T02418
Name
(GenBank) RNA-binding protein Rrp4 (containing S1 domain and KH domain)
KO
K03679
exosome complex component RRP4
Organism
mhz
Methanomethylovorans hollandica
Pathway
mhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metho_1884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhz03019
]
Metho_1884
Messenger RNA biogenesis [BR:
mhz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Metho_1884
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Metho_1884
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
ECR1_N
KH_1
RRP4_S1
RRP40_S1
S1
KH_2
Dicistro_VP4
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AGB50061
UniProt:
L0KY66
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All DBs
Position
1873605..1874417
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AA seq
270 aa
AA seq
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MDREIVVPGQLLSDNTNESGSGTYVKEGKVYSLLYGVANVKNRISVIPFSGKYIPSRKDL
VIGTVFETTSSNWIFDIGSPYDGLLHVSEYPRRVESSMMREIFNIGDCAILRIKDVDASM
KIELTLREKGLRKIKGGRLLEVPPTKVPRVIGHNGSMVSMLKKETDCEIFVGQNGRIWIN
GKDENMDKLSEAIDMIIRESHTSGLTDKISQFLQIEEEDTKVGEEVADVDIEQGEVVEDI
NSADEEDGEDTDKVDETSRKVDQLLDAEEN
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggatagagaaattgtagttccgggtcaacttctttccgataatacgaatgagtcgggc
tccggaacctatgtaaaggagggaaaagtatattctctcctttatggagtagctaatgta
aagaacaggatatctgttattccattttccggaaaatatattccttccagaaaggattta
gtcataggcactgtttttgagacaacttcttcaaactggatctttgatatcggttctcct
tatgatggcctgctgcatgtgtcagagtacccaaggcgtgtggaatcatccatgatgagg
gagatatttaacataggcgattgtgctatcctcagaataaaagatgtggacgcctctatg
aaaatagaacttaccctccgggagaaagggttaaggaaaataaaaggtggcaggctgctt
gaagtaccacctacaaaggtaccccgtgtcattgggcacaacggttccatggtctccatg
ttaaaaaaggagacagactgcgagatctttgtcggacaaaatggaaggatatggataaat
ggcaaagatgagaatatggataaactttcagaagctattgatatgatcatccgtgaatct
catacttccggtctgacagataagatcagccaattccttcagatagaagaagaagataca
aaggtgggggaagaagttgcagacgttgatatcgagcagggagaagttgtggaagatata
aactctgctgatgaagaagacggcgaagacacggataaagttgacgagacaagcagaaag
gtagaccagctactggatgcagaggaaaactga
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