Methanomethylovorans hollandica: Metho_1885
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Entry
Metho_1885 CDS
T02418
Name
(GenBank) archaeal exosome-like complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
mhz
Methanomethylovorans hollandica
Pathway
mhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metho_1885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhz03019
]
Metho_1885
Messenger RNA biogenesis [BR:
mhz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Metho_1885
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Metho_1885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AGB50062
UniProt:
L0KX82
LinkDB
All DBs
Position
1874482..1875465
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AA seq
327 aa
AA seq
DB search
MANKPEKFIDENGLRLDGRAVDEMRPMTIEIGVLSRADGSCYLEWGKNKILAAVYGPREL
HPRRMQKPDEAIVRYRYNMAAFSVEDRARPGPSRRSIEISKVSRDAFAPIIMTKYYPSAV
IDVFAEVLQADAGTRTAAINAASIALADAGIPMKGLISACAVGKVDGQLVLDLSKDEDNY
GNADLPIAMTQDGEISLLQMDGNLTKEEFKKALEMATEGCRQILEIQKEALKKKFESHEE
VVKSLVEVAEEKFDDIQNEIELIEDDFETSDLEEEEGIEVIVIKNDVSESADEISEDEFT
ELTEDEDSETDNTEDPEAEKVGEKDEQ
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggctaataaacctgagaagttcattgatgagaatggcctgcgcctggatggacgggca
gttgatgagatgaggcccatgaccatcgagatcggtgtcttatcaagggctgacggttca
tgttatttagaatggggaaagaacaagatactggcagcagtatatggtccaagggaactg
catccccgcaggatgcagaaacctgatgaggctatagtcagataccgatacaatatggca
gctttttctgtagaggacagagcaaggccaggaccaagccgcagaagcatcgagatctca
aaggttagcagagatgcctttgcccctataataatgacaaagtattaccccagtgctgta
atagatgtttttgcagaggtattgcaagcggatgcaggtacaaggacagcggctattaac
gccgcctccatcgcccttgctgacgccggtatccctatgaagggacttatatcagcatgc
gctgtgggtaaagttgacggacaactggtgctggacctgagcaaggatgaggacaattat
gggaacgcagacctccctattgccatgacccaggatggagaaatatcccttctgcagatg
gatggcaatctgacaaaggaagagttcaaaaaagcattagaaatggcaactgaaggctgc
agacagatcttggagatccagaaagaagctttgaaaaagaagttcgaatcccatgaagag
gtcgtgaaaagtctggtagaagttgctgaagaaaaattcgatgacattcagaacgagata
gaactgatagaagatgactttgaaacatctgacttggaagaggaagaaggcatcgaagtt
atagtaattaaaaatgatgtatctgagtctgctgatgagatatcagaagatgagttcaca
gaattaactgaagatgaagattcagaaacagataatacagaagatcctgaagcagagaag
gtaggtgaaaaagatgagcagtga
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