Methanomethylovorans hollandica: Metho_1929
Help
Entry
Metho_1929 CDS
T02418
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mhz
Methanomethylovorans hollandica
Pathway
mhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metho_1929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhz03019
]
Metho_1929
Enzymes [BR:
mhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metho_1929
Messenger RNA biogenesis [BR:
mhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metho_1929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Utp25_C
AAA_19
P-loop_SecA
AAA_11
DNA_pol3_beta_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGB50105
UniProt:
L0KZI4
LinkDB
All DBs
Position
1924175..1925443
Genome browser
AA seq
422 aa
AA seq
DB search
MSFENLKIKKTLQRALESEGYITPTPIQAQAIPHLLENRDLIGIAQTGTGKTAAFVLPIL
QKLSETNKPSKSRAPRVLVLAPTRELAAQIGDSFSTYGQFIRFRYTVVFGGVGQGPQVKA
LAHGVDVLIATPGRLLDLLDQGHVKLNEVEFFVLDEADRMLDMGFIKDVYRIVPLLPVKR
QSLFFSATMSPQIAELARKLLTSPVHVEVSPQATTVEKIDQFVFFVDQENKDNLLLGLLQ
HNHLRSVLVFTRTKHRANKVALMLNKNKIEADAIHGNKSQNQRTKAMDDFKSGNVRVLVA
TDIAARGIDIEDISHVINYDLPNEPENYVHRIGRTARAGSDGTAYSFCAADERDYLRSIE
KLTRQEIEVAEHHYHSETARNATGDAAKPAPRTQRGSGQKTRPQKQNRQHPVSRKPRPAR
GS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaacctaaagattaaaaaaacgcttcaaagagcgcttgaaagcgaagga
tatatcactcctacacccatacaggcacaagcaattccacatttattggaaaacagggat
ctgataggtattgcccagacaggtacaggcaagactgctgcatttgtattacctatactt
caaaaactgtcagagacaaacaaaccttccaaatcccgagcgccacgagtacttgtactt
gcacctacgagagagcttgctgcacagataggagacagcttttccacttatgggcagttc
ataaggttccggtacacagttgtattcggtggtgtaggacaaggaccccaggtgaaggct
ttagcacacggtgttgatgttcttatcgctactccaggaagactgcttgatctcctggac
cagggacacgtaaaattgaacgaagtggagttctttgtgcttgatgaagctgacaggatg
ttggatatgggtttcataaaagatgtgtacagaatagtacccttacttcctgtaaaaaga
caatctcttttcttctctgctacaatgtctccacagattgcagaacttgccagaaaactt
ctaacaagcccggtacatgtggaagtatcccctcaggcaacaacagtagaaaaaatagac
caattcgtctttttcgtggaccaggagaacaaagacaacctgttgcttggcctcctgcag
cacaatcatttaagatctgttttagtttttacccgcacaaaacatcgtgcaaataaagtg
gctttgatgcttaacaagaataaaatcgaagccgatgccatccatggtaataaatcacaa
aaccagcgtactaaagccatggacgatttcaagtcagggaatgtaagagtactggtggca
acagatattgctgcgcggggaatcgatattgaggatatatctcatgtcataaactacgat
cttcctaacgaaccagagaattatgtacatcgcatcggacgcacggcaagagcaggatcg
gatggtacagcatactcattctgtgcagcagacgaacgtgattatctgcgcagcatcgaa
aaactcacacggcaggaaatagaggttgcagaacatcactatcattcggaaacagcaagg
aacgctactggagacgcagccaaaccagctccaagaacacagcgtggatccggacagaaa
accagaccacaaaaacagaacagacaacacccagtatcaaggaaaccgcgtcctgcaaga
ggaagctaa
DBGET
integrated database retrieval system
