Methanomethylovorans hollandica: Metho_1989
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Entry
Metho_1989 CDS
T02418
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit/40 kD subunit
KO
K03047
DNA-directed RNA polymerase subunit D [EC:
2.7.7.6
]
Organism
mhz
Methanomethylovorans hollandica
Pathway
mhz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Metho_1989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhz03021
]
Metho_1989
Enzymes [BR:
mhz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Metho_1989
Transcription machinery [BR:
mhz03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Metho_1989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Fer4
Fer4_7
Fer4_10
Fer4_9
Fer4_8
Smaco_capsid
Fer4_16
Fer4_21
Fer4_2
Fer4_4
Fer4_6
Fer4_3
Fer4_17
LysM_OapA
DUF7571
Motif
Other DBs
NCBI-ProteinID:
AGB50160
UniProt:
L0KZP7
LinkDB
All DBs
Position
complement(1986547..1987341)
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AA seq
264 aa
AA seq
DB search
MTMEVDILELSDRSAKFVLSNTSAAFANGIRRASLADVPTIAITEVNIYNNTSVLYDEQL
GLRMALIPLTSNMEDFVPKEECSCGDFCPACQVSLTLSAEGPKIVYSQDLVSSDDKVQPA
DPNIPIADLREGQKIVLEAIAHMGYGNKHSRWQAGVACGYKNMPKVEFSGCDLCGACVTE
CPVDIIKMGTESAEISQEDMLKCTLCRLCEGVCDIDAIDVKTDEHSFIFTMESDGSYNTK
ELILNAGNVIKNKAASLAEILSAL
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgacgatggaagtagacatactggagctttccgataggtctgcaaagtttgtattgtct
aacaccagtgctgcatttgcaaacggcattcgtagggcttctctggcagatgttcctacg
atagctattaccgaggttaacatctataataatacctcggtcctgtatgatgagcagctt
ggcttgcgtatggcactgatcccgctgacttcaaatatggaggattttgttccaaaagaa
gaatgtagctgtggtgatttttgtccggcatgccaagtttcccttactctcagtgcagag
ggtccaaaaatagtctattcccaggaccttgtgtcttctgatgacaaggtacagcctgct
gatccaaacattccgatagcagatctccgggaaggacagaagatcgtgcttgaagccata
gctcacatgggttatggtaataagcattcccgatggcaggcaggtgtagcatgcggttac
aagaacatgccaaaggtcgagttcagtggttgtgatctatgtggtgcatgtgtaactgag
tgtcctgttgatataatcaagatgggcactgagagtgctgagatatctcaagaggatatg
cttaaatgcactctttgcaggctatgtgaaggagtttgtgatattgatgccatagacgtc
aaaacggatgaacattctttcatcttcacgatggaatctgatggctcttataacacaaag
gaactgatcttaaatgcaggaaatgtcatcaagaacaaggccgcaagtctggctgagatc
ttgtcggcactctaa
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