Mycobacterium intracellulare ATCC 13950: OCU_10500
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Entry
OCU_10500 CDS
T02158
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mia
Mycobacterium intracellulare ATCC 13950
Pathway
mia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCU_10500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mia03400
]
OCU_10500
Enzymes [BR:
mia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCU_10500
DNA repair and recombination proteins [BR:
mia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OCU_10500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFC42269
UniProt:
H8IUK6
LinkDB
All DBs
Position
1042335..1046015
Genome browser
AA seq
1226 aa
AA seq
DB search
MEFIMTAPGAARPETPIAGLVELALTAPTFQQLIDSAAASPAELHLVGPASARLFVASAL
ARLGPLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGVDTVGARLTVLR
RLAHPDDARLGPPLQVVVTAARSLLQPMTPQLGLIEPVTLSVGAEVEFEGVIARLVELAY
TRVDMVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDT
LIAVPCRELLLTEEVRQRAAELSARHPATEPAITGSVTDMLAKLAEGIAVDGMEALLPVL
RPGEHVLLTDQLAQGTPILLCDPEKIRTRAADLIKTGSEFLEASWSAAAMGTDAPVDVAQ
FGGSGFAELDDVRAAAAKGGHPWWTLSQLSDESAVELDIRAAPSARGHQHDIDGIFAMLR
AHVTTGGYAVVVAPGAGTAHRVVERLAECDTPAAMLESGAAGQVRPKKGIVGVLKGPLHD
GVIIPGATLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFV
EMVERTVGGARREYLVLEYASSKNRGGAAKNTDKLYVPMDSLDQLSRYVGGQAPALSKLG
GSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGYTETVDQL
TAITEVKGDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL
QTFTDRMTGFPVTVKGLSRFTDPAESKAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLV
VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV
LTYVGPHDDKQVAAALRRELLRDGQVFYVHNRVSSIDRTAAKIRELVPEARVVVAHGQMP
EERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS
RERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGH
VAGVGFDLYVRLVGEAVEAYRAAADGHTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRL
EAYRRLAAAASDGEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAT
TVRLSPMTLPDSAQVRLKRMYPAAGYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANL
VTALQGKAQTDIGITSSPAAMTSEGR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaattcatcatgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctc
gttgaattggcgctcaccgcgccgaccttccagcagctgatcgacagcgcggccgcgtcg
ccggccgaattgcacctggtgggtccagccagcgcacggttgttcgtggccagcgcgctg
gcgcggttgggtcctttgctggtagtcaccgcgaccgggcgcgaagccgacgacctgacc
gctgaactgcgcggcgtcttcggcgatgccgtcgcggtcttcccgtcctgggagacgctg
ccgcacgagcggctctcgcccggcgtcgacaccgtcggcgcccgcctgaccgtgctgcgg
cgcctggcccaccccgacgacgcgcggctgggccctccccttcaggtcgtggtcaccgcg
gcccgctcgctgctgcagccgatgacaccgcagctcggcctgatcgagccggtcacattg
agcgtcggtgcggaagtcgaattcgagggcgtgatcgcccggctggtcgaactggcctac
acccgggtcgacatggtgggccggcgcggcgagttcgccgtgcgcggcgggattctcgac
gtcttcccgccgacggccgagcacccggtgcgcatcgagttctggggtgacgaggtcagc
gagatgcgcatgttctccgtcgccgatcagcgttcgatcccggagatcgaggtcgacacc
ctgatcgcggtgccctgccgcgagctgctgctcacggaggaggtgcggcaacgggccgcc
gagctgtccgcgcggcacccggcgaccgagcccgcgatcaccggcagcgtcaccgacatg
ctggccaagctcgccgagggcatcgcggtcgacggcatggaggccctgctgcccgtgctg
cggcccggcgagcacgtgctgctgaccgaccaactggcgcagggcaccccgatcctgttg
tgcgaccccgagaagatccgcacccgcgccgccgacctgatcaagaccggcagcgaattc
ctcgaagcctcgtggtcggcggccgccatgggcacggacgcccccgtcgatgtcgcgcaa
ttcggcggatcgggattcgccgagctggatgacgtgcgggccgcggccgccaaaggcggg
catccgtggtggacgttgagccagttgtccgacgagtcggccgtcgagctggacatccgg
gcggcgccctcggcgcgcggccatcagcacgacatcgacggcatcttcgcgatgctgcgc
gcgcacgtcaccaccggcggctacgccgtcgtcgtcgcccccggcgccggcaccgcgcac
cgcgtggtggaacggctcgccgaatgcgacaccccggccgccatgctggaatccggggcc
gcaggccaagttcgacctaaaaaggggatagtcggcgtgctcaagggcccgctgcacgac
ggcgtcatcatccccggcgccacgctggtggtgatcaccgagaccgacctcacggggagc
cgggtcgccgccgtcgagggcaagcgcctggcggccaagcggcgcaacaccgttgacccg
ttggcgctgaccgccggtgatctcgttgtgcacgatcagcacggcatcggccggttcgtc
gagatggtcgagcgcaccgtcggcggcgcccggcgcgagtatttggtgctggagtacgcg
tccagcaagaaccgtggtggcgcggccaaaaatacagacaagctttatgtcccaatggat
tcgctggatcagctgtcgcggtacgtcggcgggcaggcgccggcgctgagcaagctcggc
ggcagcgactgggcgaacaccaagacgaaggcgcgccgcgcggtgcgcgagatcgccggc
gagctggtgtccctgtacgccaagcggcaggccagccccgggcacgcgttcggcccggac
accccgtggcaggccgagatggaagacgcgttcgggtacaccgagaccgtcgaccagctg
accgcgatcaccgaggtcaagggggacatggaaaagccgatccccatggaccgggtgatc
tgtggcgacgtgggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtc
caggacggcaagcaggtggccgtgctggtgcccaccacgctgctggcagaccagcacctg
cagaccttcaccgaccggatgaccgggttcccggtgaccgtcaagggcctgtcccggttc
accgaccccgcggagtccaaggccgtgatcgagggcctggccgacgggtcggtggacgtg
gtgatcggcacgcaccggctgttgcagaccggggtgcgctggaaggacctcggcctcgtc
gtcgtcgacgaggagcagcggttcggcgtcgagcacaaggagcacatcaagtcgctgcgc
acccacgtcgacgtgctgaccatgagcgccaccccgatcccgcgcacgctggagatgagc
ctggccgggatccgcgagatgtcgacgatcctgaccccgcccgaggagcgctacccggtg
ctgacctacgtcggcccgcacgacgacaagcaggtcgcggccgccttgcgccgcgagctg
ctgcgcgacgggcaggtcttctacgtgcacaaccgggtcagctccatcgaccggacggcg
gcgaagatccgggagctggtgcccgaggcgcgggtggtcgtcgcgcacgggcagatgccc
gaagaacggctggaacgcacggtgcaggggttctggaaccgcgaatacgacatcctggtg
tgcaccacgatcgtggagaccgggctggacatctccaacgccaacacgctgatcgtcgag
cgcgccgacaccttcggcctgtcgcagctgcaccagctgcgcggccgggtcggtcgcagc
cgggagcgcggctacgcctacttcctgtatccgccgcatgcgccgctgaccgagaccgcc
tacgaccggctggccaccatcgcgcagaacaacgagctcggcgcgggcatggctgtcgcg
atgaaggacctcgagatccgcggcgccggaaacgtgttgggcgtcgagcagtccgggcac
gtcgccggcgtcggcttcgacctgtacgtccgcctggtgggcgaggccgtggaggcctac
cgcgcggctgccgacggccacaccgtcacgacggccgaggagccgaaggacgtgcgcatc
gacctgccggtcgatgcgcacctgccgccggactacatcgccagcgaccggctgcggctc
gaggcgtaccgccggctggccgcggcggcctccgacggcgagatcgacgcggtcgtggag
gaactcgtcgaccgctacggcgcgctgcccgagccggccctgcggctggtggcggtggcc
cggctgcggctgctgtgccgcgccgcgggcatcaccgaggtgtcggcgccctcggcgacc
accgtgcggctctcgccgatgacgctgccggattcggcgcaggtgcggctcaagcggatg
tatccggcggcgggctaccgcgccacgacctccaccgtgcaggttcccatcccgcgcgcc
ggcggcgtcggcgcgccgcggctgcgcgatgtcgagctggtgcagatggtggccaacctg
gtgacggcattgcagggcaaggcgcagacggatattggtataacgagttcacctgcggcg
atgacgagtgaggggcgctaa
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