Mycobacterium intracellulare ATCC 13950: OCU_18080
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Entry
OCU_18080 CDS
T02158
Name
(GenBank) rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mia
Mycobacterium intracellulare ATCC 13950
Pathway
mia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCU_18080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mia03019
]
OCU_18080
03009 Ribosome biogenesis [BR:
mia03009
]
OCU_18080
Enzymes [BR:
mia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OCU_18080
Messenger RNA biogenesis [BR:
mia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OCU_18080
Ribosome biogenesis [BR:
mia03009
]
Prokaryotic type
rRNA processing factors
OCU_18080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AFC43027
UniProt:
H8IQB5
LinkDB
All DBs
Position
1865532..1868282
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AA seq
916 aa
AA seq
DB search
MARTLGTTSKRVLDALSELDGRIRSAHSTVDRADAVRVRDLLAAQPQESPDAATEPVVDA
GEPESRLMLETPDNAAERPHYMPLFVAPQPLDSDDDSDTDTDTDESADSDDSDGDDDEQA
DRPSNRRRRRGRRGRGRGRGEQGGPEGQNDGDDDEPQGRGKKGAQSDSGDSDDADDEDSD
DGDDSEGGDDGSADGGSRRRRRRRRRKSGSGDDNDEGPSPDDPPNTVVHERPPRNGKNGG
DGGSASNEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDR
VRSEPPHQGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG
RGRNGVLYAGEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG
RYLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRNDVTR
LQERWKQIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDEAWNTIN
EYVNSVAPDLVSKLSKYEPPAGPDGSSGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVID
RTEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE
SNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGIL
LHTDPVDSAPSNGRKSESGGRRGRRKKNKAEEPVVAKVPVHSPGEHPMFKAMAAGSSTQA
ASEDDESDEATEETSDEFDEKARRDEDVSDADQEDFDDTDDDSDDDTDDDSDDDSDDDSD
DDSDDDDLDDEEDLGDDDEDLELDDDDLDTEDSDDSDDSDDADGGSATADQGGPTQGRPR
RRRAAGRPAGPPIHAD
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
ttggcccggacgctgggaaccaccagcaaacgggtcctggacgcgctcagcgagctggac
gggcggattcgcagcgcacactccaccgtggaccgcgccgacgcggtgcgggtgcgtgac
ctgctggccgcccagccccaggaatccccggacgccgccaccgaacccgtcgtggatgcc
ggcgaacccgaatcccggctgatgctggaaacccccgacaacgccgccgagcggccgcat
tacatgccgctcttcgtcgcgccgcagccactggacagcgacgatgacagcgacaccgac
accgacaccgacgagagcgccgactccgacgattccgacggcgacgacgacgagcaggcc
gaccgcccgtcgaaccggcggcgccgtcgcggccgccggggccgcggccgcgggcgcggc
gagcagggcggacccgagggccagaacgacggcgacgacgacgagccgcagggccggggc
aagaagggcgcccagtccgactccggcgattccgacgacgccgacgacgaggactccgac
gacggcgacgactccgagggcggtgacgacggttcggcggatggtggcagccgtcgccgc
cgccggcgccggcgccgcaaatccggatcgggcgacgacaacgacgaagggccttcaccc
gacgacccgcccaacacggtcgtgcacgagcggccgccccgcaatggcaagaacggcggc
gacggcggcagcgcgagcaacgagatcaagggcatcgacggctcgactcggctggaggcc
aagcgccaacgacgccgcgacggccgcgacgccgggcggcgccgccccccggtgctgacc
gaggccgaattcctggcccgccgcgaggccgtcgaacgcgtcatggtcgtccgggaccgg
gtccgcagcgagccgccacaccagggttcgcggtatacccagatcgccgtcctcgaggac
ggcatcgtcgttgagcacttcgtgacctcggccgcgtcggcgtccctggtcggcaacatc
tacctcggcatcgtgcagaacgtgctgccctcgatggaggcggccttcgtcgacatcggc
cgcggccgcaacggcgtgctctacgccggcgaggtcaactgggaggccgccggactcggc
gggtccgaccgcaagatcgaacaggcgctcaagcccggcgactatgtcgtcgtccaggtc
agcaaggacccggtcgggcacaagggggcgcggctcaccacgcaggtgtcgctcgcgggc
cgctacctggtctacgtgccgggggcgtcgtcgaccgggatcagccgcaagttgcccgac
accgaacgccagcgcctcaaggagatcctgcgcgaggtggtgccgtccgacgcgggggtg
atcatccggaccgcgtccgagggcgtcaaggaagacgacatccgcaacgacgtcacccgc
ctgcaggagcgctggaagcaaatcgaggccaaggccatcgagatcaaggagaaggccgcc
ggggccgccgtggcgctctacgaagagcccgacgtgctggtcaaggtcatccgcgacctg
ttcaacgaagacttcgcgggcttggtcgtctccggggacgaggcctggaacaccatcaac
gaatacgtgaattccgttgcgcccgaccttgtttcgaagctgagcaaatacgagccgccc
gccgggccggacgggtcgagcgggccggacgtgttcgccgtgcaccgcatcgacgagcag
ctggccaaggcgatggaccgcaaggtctggctgccctcgggcggcaccctggtgatcgac
cggaccgaggcgatgacggtggtcgacgtcaacaccggcaagttcactggctccgggggg
aacctcgagcagacggtcaccaagaacaacctcgaggcggccgaggagatcgtgcgccaa
ctgcggctgcgcgacatcggcggcatcgtcgtcatcgacttcatcgacatggtgctggaa
tccaaccgcgatctggtgctgcgccggctcaccgaggcgctggcccgtgaccgcacccgc
catcaggtgtccgaggtgacgtcgctcggtttggtgcagctgacccgcaagcggttgggc
accggactggtcgaggccttctcgacgtcgtgcccgaactgtggcggccgcggcatcctg
ctgcacaccgacccggtggattcggccccgtcgaacggccgcaagtccgagtccgggggc
cggcgcggccggcgcaagaagaacaaggccgaggagccggtcgtggccaaggtgcccgtc
cattcgcccggcgagcacccgatgttcaaagcgatggcggccggctcgtccacgcaggcg
gcatccgaggacgacgaatccgacgaggccaccgaggaaaccagcgacgagttcgacgag
aaggcgcggcgcgacgaggacgtctccgacgccgaccaagaggacttcgacgacaccgac
gacgactcggacgacgacaccgacgacgactcggacgacgattccgacgacgactcggac
gacgactcggatgacgacgacctcgatgacgaggaagacctgggcgacgacgacgaggac
ctcgaactcgacgacgacgacctggacaccgaggactccgacgattccgacgactccgac
gatgccgacggcggttcggccacggcggaccagggcggcccaacccagggccgcccccgg
cgccgacgcgcggcgggcaggcccgccgggccgccgatccacgcggactga
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