Mycobacterium intracellulare ATCC 13950: OCU_25450
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Entry
OCU_25450 CDS
T02158
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mia
Mycobacterium intracellulare ATCC 13950
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mia03019
]
OCU_25450
Enzymes [BR:
mia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OCU_25450
Messenger RNA biogenesis [BR:
mia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OCU_25450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
NACHT
nSTAND3
ABC_tran
DUF3734
PhoH
T2SSE
AAA_23
HBM
Motif
Other DBs
NCBI-ProteinID:
AFC43764
UniProt:
H8IL62
LinkDB
All DBs
Position
complement(2680881..2684798)
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AA seq
1305 aa
AA seq
DB search
MAEPSAAQLRNQLDGLTLRDAARIGRRLMNLRAATPEKLRRLADEIAAARPLVAARQAAV
PTITYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQ
PRRLAARTVAQRIADELASPLGEAVGYSVRFTDRVGDRTLIKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFENAPIIEV
SGRTYPVEVRYRPLEVAVPSASTDDPDDPDHEIVRTETRDEIEAIVDAIRELEAEPPGDV
LVFLSGEREIRDTADALTFLTNGPGHTEVLPLYARLPTAEQQKVFAPHTGRRVVLATNVA
ETSLTVPGIRYVIDPGNARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRL
YSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVE
LGAFDGRGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSD
REEAAREKHARFADEHSDFMSYLNLWHYLRGQRKSLSGSAFRRMCRSEFLHYLRIREWQD
LVGQLRSIAGDLGIVEDTAGEPADPARVHAALVAGLLSHVGMRREDTREYLGARNANFVL
APGSVLTKRPPRWVVVAELVETSRLYGRTAARIQPEVVERVAGDLVQRTYSEPHWDAKRG
EVMAYERVTLYGLPLVARRRVGYARIEPVVARELFIRHALVEGEWQTRHHFFRDNARLRA
ELEELEERARRRDLLVGDDDVYALYDARVPTEVVSARHFDAWWKRQRHKTPDLLTFTRAD
LLRTDDNAGTDRPTTWRTGDAALPLTYRFEPGAADDGVTVHVPIDVLARLGGDEFAWQVP
ALREELVTALIRSLPKDLRRNFVPAPDTARAVLAAIEPAAEPLLSALQRELRRRTGVLVP
VEAFDLDKLPPHLRVTFAVESPDGAEVARGKDLQELQERLTTPARRAVAHAVAGELERTG
LRDWPDDLDELPRVIERAVQGRTVRGFPAFVDTGGAVDLRVLATPDEQHRAIGPGLRRLV
RLSVASPVKAIARQLDPRTRLTLGTNPDGDLSALLEDCADAAADTLMPTPVWTRGEFVAL
QERLGKTLAPTAAEIARAVERVLAAAHDVRLLLPTNPPPAHSEAIADVRAQLDRLLPPGF
VTATGRAHLADLTRYLLAIRRRLDGLARGAQADRERMDRVHAVQDAYDELLRELPRTART
DPDVLDIARQIEELRVSLWAQQLGTPRPVSEQRIYRAMDAVRDRR
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaaccgtctgcagcgcagttgcgcaaccaactcgacggcctgacgttgcgcgac
gccgcccgcatcggcaggcgcctgatgaacctccgcgccgccacgcccgagaagctgcgg
cggctcgccgacgagatcgcggcggcgcggccgctcgtcgcggcccgccaggccgccgtc
ccgacgatcacctaccccgacctgccggtcagcgcacggcggcaggaaatcgccgacgcg
atccgcgggaatcaggtggtggtgatcgccggggagaccgggtcgggcaaaaccacgcag
ctgcccaagatctgcctggaggcgggtcgcggcatccgcggaaccatcgggcatacccag
ccccgccggctggccgcgcgcaccgtcgcccagcgcatcgccgacgagctggcaagcccg
ctgggcgaggccgtcggctacagcgtgcggttcaccgaccgggtcggcgaccgcaccctg
atcaagctgatgaccgacggaatcttgctcgccgagatccagcgcgaccgccgcctgctg
cgctacgacaccctgatcctcgacgaggcacacgagcgcagcctcaacatcgattttctg
ctcggctatctgcgcgagttgttgccgcgccggcccgatttgagggtgatcgtcacctcg
gcgaccatcgagccgcagcgcttcgccgcgcatttcgagaatgcgccgatcatcgaggtg
tccgggcggacctatccggtcgaggtgcgttaccggccgctggaggtcgccgtgccttcc
gcatccacggacgatcccgacgatccggaccacgagatcgtccgcaccgagacccgcgac
gagatcgaggcgatcgtcgacgccatccgtgaactcgaagccgagccgcccggcgacgtc
ctcgtctttctctcgggtgagcgcgagatccgtgacaccgcagatgctttgacgtttttg
acgaacggcccgggccacaccgaagtgcttccgctgtatgcccggctgcccaccgccgag
caacaaaaggtgttcgcgccgcataccgggcgtcgcgtcgtgctggcgaccaacgtcgcc
gagacgtcgttgaccgtgccgggaatccgctacgtcatcgaccctggcaacgcccggatt
tcgcgctacagtcgccgcctgaaggtgcagcggctgccgatcgagcccatctcgcaggcc
tccgccgcccaacgggccggccggtgcggccgggtcgcgcccggcgtgtgcatccggttg
tactccgagcaggacttcgcggcccggccgcgctacaccgagcccgagatcctgcggacg
aacctcgccgccgtactgctgcagatggcggcgctgcaaatcggcgatatcgaaaagttc
ccgttcctcgatccgccggaccggcgcagcgtccgcgacggcgtccagctgctggtcgag
ctcggcgcgttcgacggccggggcgcgatcaccgagctcggccgccgccttgcccggctg
ccggtcgacccacggctgggccggatgatcctgcaggccgagaccgaaggatgcgtgcgg
gagatgctggttttggccgcggcgctgagcatcccggacccgcgggaacggccgagcgat
cgcgaggaagccgcccgcgaaaagcacgcccgcttcgccgacgaacactccgacttcatg
tcgtacctcaacctgtggcactatctccgcggacaacggaagtcgttatccggcagcgcg
tttcgacggatgtgccgatccgaattcctgcactacctgcgcatccgcgagtggcaggac
ctggtcggccagctacgcagcatcgccggcgacctgggcatcgtcgaagacaccgccggc
gagcccgccgatccggcccgcgtgcacgcggcgctggtcgccgggttgctgtcgcatgtg
ggcatgcgccgcgaggacacgcgcgagtacctgggagcgcgtaacgcgaacttcgtgctg
gcgcccggctcggtgctcaccaaacggccgccgcgctgggtcgtcgtggcggagttggtc
gagaccagccggctgtatgggcgcacggccgcgcgcatccagccggaggtggtcgagcgg
gtggccggcgacctggtgcagcgcacctacagcgagccgcattgggacgccaagcgcggc
gaggtgatggcctacgagcgggtgacgctgtatggcctgccgctggtggcgcgccgccgc
gtcggatacgcccgcatcgagccggtggtggcgcgcgagctgttcatccggcacgccctg
gtcgaaggggagtggcagacccggcatcacttctttcgcgacaacgcccggctgcgcgcc
gagctcgaggagctggaggagcgtgcccgccgccgcgacctgctggtcggcgacgacgac
gtctacgcgctctacgacgcccgcgttcccaccgaggtggtctcggcgcggcatttcgac
gcgtggtggaaacgccagcggcacaagacacccgacctgctgacgttcacccgcgccgac
ctgctgcgcaccgacgacaacgccggcaccgatcggcccaccacgtggcggacgggcgac
gccgcgctgccgctgacctaccggttcgagccgggggccgccgacgacggggtcacggtg
catgtcccgatcgacgtgctggcgcgcctggggggtgacgagttcgcctggcaggtaccc
gcgctgcgcgaggaactggtcaccgcgctcatccgctcactgccgaaagacctgcgccgc
aacttcgttcccgcccccgacacggcacgcgcggtgctggccgcaatcgagccggccgcc
gagccgctgctgtcggcgttgcagcgcgaattgcgccgtcgcaccggtgttttggtgccc
gtcgaggcgttcgacctggacaagctgccgccgcacctgcgggtgacgttcgcggtggag
tcccctgacggcgccgaggtcgcccgcggcaaggatctgcaggagctgcaggaacgactc
acgacgccggcccgccgcgcggtggcgcacgcggtcgcgggcgagctcgagcgcaccggg
ttgcgcgactggcccgacgatctcgacgaactgccgcgcgtcatcgaacgcgccgtgcag
gggcgcaccgtgcgaggctttccggcgttcgtcgacaccggcggcgccgtcgacctacgc
gtgttggcgacgccggacgaacagcaccgggcgatcggtcccggccttcggcgattggtc
cggctcagcgttgcgtccccggtgaaagccattgcgcgacaacttgacccgcgcacccgt
ctgacgctcggcaccaaccccgacggcgacctgtccgcgctgctggaggactgtgccgac
gccgcggccgacaccctcatgccgacgccggtgtggacgcggggggagttcgtcgcgttg
caagaacgcctgggaaagaccttggcgcccacggccgccgagattgcgcgcgcggtcgag
cgggtactcgccgccgcccacgacgtgcgactcctgctgcccaccaacccgccgcccgcg
cactccgaggcgatcgcggacgtgcgcgcccagctcgaccggctcttgccgccgggcttc
gtcaccgcgaccggccgggcgcacctcgccgatctcacccgctatctgctcgcgatccgt
cgccggctcgacgggctggcgcgcggcgcccaggccgaccgggagcggatggaccgggtg
cacgccgtgcaggacgcctacgacgaactgctgcgtgagctgccacgaacggcgaggacg
gaccccgacgtcctcgatatcgcccgccagatcgaggaactcagggtgagcctgtgggcc
cagcagctcggcacgccgcgcccggtcagcgagcagcggatctaccgcgccatggacgct
gtgcgcgatcgtcgctga
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