Mycobacterium intracellulare ATCC 13950: OCU_27850
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Entry
OCU_27850 CDS
T02158
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
mia
Mycobacterium intracellulare ATCC 13950
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mia03021
]
OCU_27850
Transcription machinery [BR:
mia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OCU_27850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_3
HTH_23
Sigma70_ECF
HTH_Crp_2
MarR_2
MarR
HTH_24
DUF7343
HTH_Tnp_4
GerE
DUF1492
DUF134
KORA
HTH_Tnp_ISL3
LacI
HTH_7
HTH_ParB
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AFC44004
UniProt:
H8INQ6
LinkDB
All DBs
Position
2917132..2917953
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AA seq
273 aa
AA seq
DB search
MRGTMTHTIAPTRPAPAPARQSDDSYDDVVDMFVALHRMPAESHEYARQREYIVARCLPL
ADHVASHFARRGEGLEDLIQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDY
SWGMRVPRRLRELHVQISRATADLAQQLGRAPNAGELSQMLEVPREEIVECLVAGDAYRL
DSLDAPLGADSSGTPRSVADSVGDIDPQIEHITNREALRALVATLPPRERDVLRMRFFES
MTQSQIAERIGVSQMQVSRILANTLRCLRDQLE
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcggcacgatgacccacacgattgccccaacccgtcccgctccggcgcccgccaga
caatccgacgattcatacgacgacgtagtcgacatgttcgtggcgctgcatcgcatgccg
gccgagtcgcacgagtacgcccgccagcgcgaatacatcgtcgcccgctgcctgccgctg
gccgaccacgtggccagccacttcgcccgccggggcgagggtctcgaggacttgattcag
gtcgcgcgcctgggcttgatgaacgccgttaaccggttcgaccctgcgaagggccccagc
ttcatcggtttcgccgtccccaccatgatgggcgaggtccggcgttatttccgcgactac
agctgggggatgcgtgtcccgcggcggttgcgcgaactgcacgtgcagatcagcagggcg
accgccgatctcgcccagcagctcgggcgcgcacccaacgcgggcgaactgtcgcagatg
ctcgaggttccgcgggaggagatcgtcgaatgcctcgtcgccggcgatgcctaccggctc
gattccctcgacgcaccgctgggcgccgatagttccggaacgccgcgctcggtggccgac
tcggtgggcgacatcgatccgcagatcgagcacatcaccaaccgcgaggcgctgcgggcc
ctcgttgccaccctgccgccacgcgaacgcgacgtcttgcgcatgcggttcttcgaatcg
atgacgcaaagccagatcgcggagcggatcggggtctcgcagatgcaggtctcgcgcatc
ctggcaaacacgctgcgctgcctgcgcgaccaactcgagtag
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